View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_high_6 (Length: 644)
Name: NF7777_high_6
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 6 - 371
Target Start/End: Original strand, 37746632 - 37746997
Alignment:
| Q |
6 |
gtttggtggtttatgacatatgcattatctttttgcatttgatttaattggaccttggtgtttatgctcaaaatatggtgagaaacaatttggagcaaaa |
105 |
Q |
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| T |
37746632 |
gtttggtggtttatgacatatgcattatctttttgcatttgatttaattggaccttggtgtttatgctcaaaatatggtgagaaacaatttggagcaaaa |
37746731 |
T |
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| Q |
106 |
actcttaaacccactattcctgctgcgtttatgttctcataatttgagaattagagtttataatgtatttccttttaactttataatttgtttgtgttac |
205 |
Q |
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| T |
37746732 |
actcttaaacccactattcctgctgcgtttatgttctcataatttgagaattagagtttataatgtatttccttttaactttataatttgtttgtgttac |
37746831 |
T |
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| Q |
206 |
ttttgtgactttaaagatacacgtttattttctatcatcattttctcttgtatcatattactacataatcaccttattttctattcattttttgttactt |
305 |
Q |
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| T |
37746832 |
ttttgtgactttaaagatacacgtttattttctatcatcattttctcttgtatcatattactacataatcaccttattttctattcattttttgttactt |
37746931 |
T |
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| Q |
306 |
tatttcttctagctttccttcattaaccaaacaaatagtaaagaatgtactactaagttctccaag |
371 |
Q |
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| T |
37746932 |
tatttcttctagctttccttcattaaccaaacaaatagtaaagaatgtactactaagttctccaag |
37746997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 459 - 628
Target Start/End: Original strand, 37747085 - 37747254
Alignment:
| Q |
459 |
ccctttatcaacttcccgttccttctcccctacttgctgagcaggacgtaattgccatattttaattaggaggtatgtgatatatactaactatgttgta |
558 |
Q |
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| T |
37747085 |
cccttaatcaacttcccgttccttcccccctacttgctgagcaggacgtaattgccatattttaattaggaggtatgtgatatatactaactatgttgta |
37747184 |
T |
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| Q |
559 |
tgtccatgactttttcggtttgttatctagcttgatttggttggcctgcttttggagcatttggaaagat |
628 |
Q |
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| T |
37747185 |
tgtccatgactttttcggtttgttatctagcttgatttggttggcctgcttttggagcatttggaaagat |
37747254 |
T |
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