View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7777_low_10 (Length: 577)
Name: NF7777_low_10
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 5 - 559
Target Start/End: Original strand, 44863907 - 44864461
Alignment:
| Q |
5 |
gtatggtgttgtatcccgggttttctttatatcgtgggttatatgaatttgcacagtctgctgccaccatttctagtaattcagggactggtggtatgct |
104 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44863907 |
gtatggagttgtatcccgggttttctttatatcgtgggttatatgaatttgcacagtctgctgccaccatttctagtaattcggggactggtggtatgct |
44864006 |
T |
|
| Q |
105 |
gtggcaggatctgaacgatagcaccaatggcatgaaagaggtcttaattatcatgcttgttgagtggatagtagtgctttttattgcttattacatcgat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44864007 |
gtggcaggatctgaacgatagcaccaatggcatgaaagaggtcttaattatcatgcttgttgagtggatagtagtgctttttattgcttattacatcgat |
44864106 |
T |
|
| Q |
205 |
caagtattgtcgacaggaagtggaaaaagtcctcttttcttcttgaaaagatttcagaaaaaacctccatcattagagaagctcagtattcaaaggcagg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44864107 |
caagtattgtcgacaggaagtggaaaaagtcctcttttcttcttgaaaagatttcagaaaaaacctccatcattcgagaagctcagtattcaaaggcagg |
44864206 |
T |
|
| Q |
305 |
ggtcaaaagttttggtacagttggagaaagaagatgtcatccaagaggtgagctttatgtgtattgaataaatgtgttacctgagtgaggagtgttagtt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44864207 |
ggtcaaaagttttggtacagttggagaaagaagatgtcatccaagaggtgagctttatgtgtattgaataaatgtgttacctgagtgaggagtgttagtt |
44864306 |
T |
|
| Q |
405 |
gtatgatttacaaagcatcaataacttgggacagctaggtatggattctaattgagaaccaaataactttccttttttggagaatcagttttgtaataaa |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44864307 |
gtatgatttacaaagcatcaataacttgggacagctaggtatggattctaattgagaaccaaataactttccttttttggagaatcagttttgtaataaa |
44864406 |
T |
|
| Q |
505 |
ttgtcactagttcttaacatattcagcattggagatgaacaaattggtttgtcat |
559 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44864407 |
ttgtcactagttcttaacatattcagcattggagatgaacaaattggtttgtcat |
44864461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 379
Target Start/End: Original strand, 44849652 - 44850026
Alignment:
| Q |
5 |
gtatggtgttgtatcccgggttttctttatatcgtgggttatatgaatttgcacagtctgctgccaccatttctagtaattcagggactggtggtatgct |
104 |
Q |
| |
|
|||||| ||| |||||||||||| |||||||||||||||||||||| |||||| |||||||| || | | ||||||||||||||| ||||||| |
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| T |
44849652 |
gtatggagttatatcccgggtttgctttatatcgtgggttatatgagtttgcagagtctgct---acaaatggcagtaattcagggactaatggtatgag |
44849748 |
T |
|
| Q |
105 |
gtggcaggatctgaacgatagcaccaatggcatgaaagaggtcttaattatcatgcttgttgagtggatagtagtgctttttattgcttattacatcgat |
204 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||| | ||||||| | |||||||||| | || |||||||||||||| |
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|
| T |
44849749 |
gtggcaggatctgagcgatagcgccaatggcatgaaagaggtcttaattatcatgtcttctgagtgggtcgtagtgctttgtgtttcttattacatcgat |
44849848 |
T |
|
| Q |
205 |
caagtattgtcgacaggaagtggaaaaagtcctcttttcttcttgaaaagatttcagaaaaaacctc---catcattagagaagctcagtattcaaaggc |
301 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||| |
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| T |
44849849 |
caagtattgtctacaggaagtggaaaaagtcctcttttcttcttgaaaggatttcagaaaaaacctctttcatcattgaagaagctcgctattcaaaggc |
44849948 |
T |
|
| Q |
302 |
aggggtcaaaagttttggtacagttggagaaagaagatgtcatccaagaggtgagctttatgtgtattgaataaatgt |
379 |
Q |
| |
|
|||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44849949 |
aggggtcagaagttttggctcagatggagaaagaagatgtcatccaagaggtgagctttatgtgtattgaataaatgt |
44850026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 5 - 379
Target Start/End: Original strand, 44898121 - 44898495
Alignment:
| Q |
5 |
gtatggtgttgtatcccgggttttctttatatcgtgggttatatgaatttgcacagtctgctgccaccatttctagtaattcagggactggtggtatgct |
104 |
Q |
| |
|
|||||| |||||||||||| ||| |||||||||||||||| ||||| |||| ||||||||| ||||| |||||| ||||||| |||||||| |
|
|
| T |
44898121 |
gtatggagttgtatcccggatttgctttatatcgtgggttgtatgagtttggacagtctgc---caccagcggcagtaatatggggactgttggtatgcg |
44898217 |
T |
|
| Q |
105 |
gtggcaggatctgaacgatagcaccaatggcatgaaagaggtcttaattatcatgcttgttgagtggatagtagtgctttttattgcttattacatcgat |
204 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
44898218 |
gtggcaggatctgagtgatagcgccaatggcatgaaagaggtcttaattatcatgtttgctgagtggatcatagtgctttttgttgcttattacatcgat |
44898317 |
T |
|
| Q |
205 |
caagtattgtcgacaggaagtggaaaaagtcctcttttcttcttgaaaagatttcagaaaaaacctc---catcattagagaagctcagtattcaaaggc |
301 |
Q |
| |
|
||||||| ||| |||||||||||||||||| || |||||||||||||| |||||| ||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
44898318 |
caagtatcgtcaacaggaagtggaaaaagtactattttcttcttgaaaggatttctgaaaaaacctctttcatcatgcaagaagctcagtattcaaaggc |
44898417 |
T |
|
| Q |
302 |
aggggtcaaaagttttggtacagttggagaaagaagatgtcatccaagaggtgagctttatgtgtattgaataaatgt |
379 |
Q |
| |
|
||| |||||| ||||| | ||| |||||||| |||| || |||||||||| | |||||| |||||||||||||| |
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|
| T |
44898418 |
aggagtcaaatgttttagctcagatggagaaaccagatatcgtccaagaggttatctttatacttattgaataaatgt |
44898495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 13 - 379
Target Start/End: Original strand, 44837855 - 44838221
Alignment:
| Q |
13 |
ttgtatcccgggttttctttatatcgtgggttatatgaatttgcacagtctgctgccaccatttctagtaattcagggactggtggtatgctgtggcagg |
112 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| ||||| |||||||||| | | | ||| | ||||||| | |||||| |||||||| |||| ||| |
|
|
| T |
44837855 |
ttgtatcctgggtttgctttatatcgtgggttgtatgagtttgcacagttttc---ctccagtctcagtaatttaaggactgatggtatgcggtggaagg |
44837951 |
T |
|
| Q |
113 |
atctgaacgatagcaccaatggcatgaaagaggtcttaattatcatgcttgttgagtggatagtagtgctttttattgcttattacatcgatcaagtatt |
212 |
Q |
| |
|
|||||| ||| || ||||||||||||||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
44837952 |
atctgagtgatggcgtcaatggcatgaaagaagtcttaattatcatgtctgctgagtggatagtagtgcttttagttgcttattacatcgaccaagtatt |
44838051 |
T |
|
| Q |
213 |
gtcgacaggaagtggaaaaagtcctcttttcttcttgaaaagatttcagaaaaa---acctccatcattagagaagctcagtattcaaaggcaggggtca |
309 |
Q |
| |
|
||| ||||||||||| ||| ||||||| |||||||||||| ||||||||| ||| || ||||||||| | |||| ||||||||||||||| |||||| |
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|
| T |
44838052 |
gtcaacaggaagtgggaaaggtcctctattcttcttgaaaggatttcagataaaactacttccatcattgaaaaagcccagtattcaaaggcaagggtca |
44838151 |
T |
|
| Q |
310 |
aaagttttggtacagttggagaaagaagatgtcatccaagaggtgagctttatgtgtattgaataaatgt |
379 |
Q |
| |
|
|||||||| | ||| |||||||| ||||||||||||||||||| |||||||| |||||| ||||||| |
|
|
| T |
44838152 |
aaagtttttgctcagatggagaaacctgatgtcatccaagaggtgaactttatgtctattgattaaatgt |
44838221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 98 - 480
Target Start/End: Original strand, 44881883 - 44882254
Alignment:
| Q |
98 |
gtatgctgtggcaggatctgaacgatagcaccaatggcatgaaagaggtcttaattatcatgcttgttgagtggatagtagtgctttttattgcttatta |
197 |
Q |
| |
|
|||||| ||||||| || ||| ||||||| || |||||||||||||||||||||||||||| |||||||||| | || || ||||| |||||||||| |
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|
| T |
44881883 |
gtatgcagtggcagaatttgagcgatagcgacagtggcatgaaagaggtcttaattatcatgtctgttgagtgggtcatattgatttttgttgcttatta |
44881982 |
T |
|
| Q |
198 |
catcgatcaagtattgtcgacaggaagtggaaaaagtcctcttttcttcttgaaaagatttcagaaaa-aacctccatcattagagaagctcagtattca |
296 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||| ||||||||||||| ||||| |||||| ||||| ||||| | || || |||||||| |
|
|
| T |
44881983 |
catcgatcaagtaaactcgacaggaaatggaaaaagtccttgtttcttcttgaaaggattt-agaaaacaacctgcatcact----aacctaagtattca |
44882077 |
T |
|
| Q |
297 |
aaggcaggggtcaaaagttttggtacagttggagaaagaagatgtcatccaagaggtgagctttatgtgtattgaataaatgtgttacctgagtgaggag |
396 |
Q |
| |
|
|||||| |||||||||| || || || ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
44882078 |
aaggcaagggtcaaaagcttcggcgcaaatggagaaagcggacgtcatccaagaggtgagctttatgtgtattgaataaatgtgccacctcagtgaggag |
44882177 |
T |
|
| Q |
397 |
tgttagttgtatgatttacaaagcatcaataacttgggacagctaggtatggattctaattgagaaccaaataactttcctttt |
480 |
Q |
| |
|
|||| |||| ||||| ||| || ||||||||||||| ||| ||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
44882178 |
---tagtggtatcatttataaaacaccaataacttggga----tagctatgggttctacttgagaaccaagtaactttcctttt |
44882254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 44881808 - 44881866
Alignment:
| Q |
5 |
gtatggtgttgtatcccgggttttctttatatcgtgggttatatgaatttgcacagtct |
63 |
Q |
| |
|
|||||| ||||||||| |||||| |||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
44881808 |
gtatggagttgtatcctgggtttgctttatatcgtgggttgtatgagtttggacagtct |
44881866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 44850148 - 44850193
Alignment:
| Q |
510 |
actagttcttaacatattcagcattggagatgaacaaattggtttg |
555 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || |||||||||| |
|
|
| T |
44850148 |
actagttcgtaacatattcagcattggagataaatgaattggtttg |
44850193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 112 - 268
Target Start/End: Complemental strand, 12926671 - 12926515
Alignment:
| Q |
112 |
gatctgaacgatagcaccaatggcatgaaagaggtcttaattatcatgcttgttgagtggatagtagtgctttttattgcttattacatcgatcaagtat |
211 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||| ||||| ||| | || |||||| || |||| | || | |||||||||||||||||||| | |
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|
| T |
12926671 |
gatctcaatgatagcacaaatggcatgaaagaggtcttgattataatgttcgtggagtggctattagttttgttcttcgcttattacatcgatcaagttt |
12926572 |
T |
|
| Q |
212 |
tgtcgacaggaagtggaaaaagtcctcttttcttcttgaaaagatttcagaaaaaac |
268 |
Q |
| |
|
| || ||| ||||| | |||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
12926571 |
tatcaacacgaagttggaaaagtcctcttttgttcttgaaaggatttcagaaaaaac |
12926515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 12926774 - 12926721
Alignment:
| Q |
6 |
tatggtgttgtatcccgggttttctttatatcgtgggttatatgaatttgcaca |
59 |
Q |
| |
|
||||| ||| ||||| |||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
12926774 |
tatggagttatatcctgggtttgctttatatcgtgggttatatgaattttcaca |
12926721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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