View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7777_low_11 (Length: 576)

Name: NF7777_low_11
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7777_low_11
NF7777_low_11
[»] chr6 (58 HSPs)
chr6 (214-565)||(30059811-30060162)
chr6 (20-163)||(30059617-30059760)
chr6 (400-565)||(29887296-29887461)
chr6 (400-565)||(28926382-28926547)
chr6 (410-565)||(24730854-24731009)
chr6 (400-541)||(29835238-29835379)
chr6 (400-541)||(29894576-29894717)
chr6 (403-565)||(29073762-29073924)
chr6 (403-565)||(29078526-29078688)
chr6 (403-565)||(29106335-29106497)
chr6 (400-541)||(29866672-29866813)
chr6 (400-565)||(30061830-30061995)
chr6 (410-565)||(24890091-24890246)
chr6 (400-565)||(29211228-29211393)
chr6 (400-562)||(24263587-24263749)
chr6 (400-565)||(29905638-29905803)
chr6 (216-407)||(30061508-30061705)
chr6 (400-565)||(30126890-30127055)
chr6 (410-565)||(29882434-29882589)
chr6 (410-565)||(29909590-29909745)
chr6 (412-557)||(24886413-24886557)
chr6 (400-565)||(30118576-30118741)
chr6 (410-565)||(29903245-29903400)
chr6 (410-565)||(29357824-29357979)
chr6 (404-563)||(29929274-29929433)
chr6 (410-563)||(29116262-29116415)
chr6 (400-563)||(29085019-29085182)
chr6 (400-565)||(29348433-29348598)
chr6 (400-563)||(29889731-29889894)
chr6 (473-565)||(29898076-29898168)
chr6 (422-557)||(29946444-29946579)
chr6 (442-563)||(29099344-29099465)
chr6 (461-565)||(29366317-29366421)
chr6 (457-565)||(29876824-29876932)
chr6 (465-565)||(30999838-30999938)
chr6 (271-407)||(29894842-29894978)
chr6 (57-163)||(30061350-30061455)
chr6 (282-407)||(29866938-29867063)
chr6 (400-528)||(29949732-29949860)
chr6 (471-565)||(24271853-24271947)
chr6 (443-565)||(30149526-30149648)
chr6 (412-565)||(25451117-25451270)
chr6 (292-407)||(29887586-29887701)
chr6 (467-533)||(16702057-16702123)
chr6 (311-407)||(29835504-29835600)
chr6 (413-528)||(29953542-29953657)
chr6 (400-458)||(24271799-24271857)
chr6 (448-549)||(30053442-30053543)
chr6 (292-384)||(24271559-24271651)
chr6 (410-485)||(29912051-29912126)
chr6 (410-485)||(29914071-29914146)
chr6 (292-407)||(30126650-30126765)
chr6 (466-528)||(15727090-15727152)
chr6 (251-407)||(29085307-29085466)
chr6 (440-565)||(30135124-30135250)
chr6 (282-407)||(24263337-24263462)
chr6 (473-565)||(24739103-24739195)
chr6 (282-358)||(28926132-28926208)
[»] scaffold0573 (2 HSPs)
scaffold0573 (400-565)||(4136-4301)
scaffold0573 (282-358)||(4475-4551)
[»] scaffold0237 (1 HSPs)
scaffold0237 (410-565)||(22342-22497)
[»] chr3 (5 HSPs)
chr3 (446-564)||(24219116-24219234)
chr3 (473-566)||(24226818-24226911)
chr3 (467-537)||(33997967-33998037)
chr3 (400-528)||(16351086-16351214)
chr3 (269-337)||(24208752-24208820)
[»] chr2 (1 HSPs)
chr2 (426-557)||(15062737-15062868)
[»] chr1 (5 HSPs)
chr1 (455-567)||(10130134-10130246)
chr1 (466-565)||(17251312-17251411)
chr1 (440-565)||(19490249-19490374)
chr1 (466-549)||(41316274-41316358)
chr1 (477-537)||(41198768-41198828)
[»] scaffold0054 (1 HSPs)
scaffold0054 (501-565)||(53532-53596)
[»] scaffold0572 (1 HSPs)
scaffold0572 (466-565)||(3232-3331)
[»] chr7 (1 HSPs)
chr7 (400-528)||(3643073-3643201)
[»] scaffold0014 (3 HSPs)
scaffold0014 (401-549)||(137389-137537)
scaffold0014 (467-563)||(121382-121478)
scaffold0014 (479-549)||(104652-104722)
[»] scaffold0019 (1 HSPs)
scaffold0019 (466-528)||(126024-126086)
[»] scaffold0429 (1 HSPs)
scaffold0429 (466-549)||(6211-6294)
[»] scaffold0051 (2 HSPs)
scaffold0051 (466-565)||(47804-47903)
scaffold0051 (481-549)||(43201-43269)
[»] chr4 (1 HSPs)
chr4 (461-528)||(44262489-44262556)
[»] scaffold0654 (1 HSPs)
scaffold0654 (467-528)||(1122-1183)
[»] chr8 (1 HSPs)
chr8 (448-509)||(9782594-9782655)
[»] scaffold0652 (1 HSPs)
scaffold0652 (467-563)||(1197-1293)
[»] scaffold0110 (1 HSPs)
scaffold0110 (473-565)||(43777-43869)
[»] scaffold0086 (1 HSPs)
scaffold0086 (471-515)||(31220-31264)


Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 58)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 214 - 565
Target Start/End: Original strand, 30059811 - 30060162
Alignment:
Q  214 ctatgtagaattcaagaaaaaccttacctagttctgatcttacaatacaccactcacaatcatttcacgaagtctcttcgccttatcgttatcattttta 313  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||    
T  30059811 ctatgtagaattcaagaaaaatcttacctagttctgatcttacaatacaccactcacaatcatttcacaaagtctctccgccttatcattatcattttta 30059910  T
Q  314 tcaaacagagaacgtataattattccgtaagtcacagcatttggatagcaattattgtccttcatttttgatagcaaagccaaggctccatcaattagaa 413  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30059911 tcaaacagagaacgtataattattctgtaagtcacagcatttggatagcaattattgtccttcatttttgatagcaaagccaaggctccatcaattagaa 30060010  T
Q  414 tagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaa 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  30060011 tagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaacctgatggtttttgcataaagcatttaa 30060110  T
Q  514 tatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30060111 tatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 30060162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 30059617 - 30059760
Alignment:
Q  20 taaaacaattagtaaaacacgacaacaataattataatatccctcgtgttggaactcaccaatatatcattttgtttagtataacaacacttaacaaata 119  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30059617 taaaacaattagtaaaacacaacaacaataattatagtatccctcgtgttggaactcaccaatatatcattttgtttagtataacaacacttaacaaata 30059716  T
Q  120 aaacaacaataataaaggcagtctatcccattaggtgaagcagc 163  Q
    ||| |||||||| ||||||||||| |||||||||||||||||||    
T  30059717 aaaaaacaataacaaaggcagtctttcccattaggtgaagcagc 30059760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 400 - 565
Target Start/End: Complemental strand, 29887461 - 29887296
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 499  Q
    ||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||  ||||||||||||    
T  29887461 tccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaaatttgttaataacgcaattgccttgtcaacctgatggtttttg 29887362  T
Q  500 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    |||||||||| ||||| |||| |||||||||||||||||||| ||||||||||||||| |||||||    
T  29887361 cataaagcatctaataaagaactgtaagtaattatatcaggtggttgacctctatcatgcatctca 29887296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 400 - 565
Target Start/End: Original strand, 28926382 - 28926547
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 499  Q
    ||||| ||| |||||||||| |||||| ||||||||| | | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28926382 tccattaataagaatagtgtatgtgtacatatttggttgaagaccctggtctttcaattttgttaataatgcaattgccttgtcaacatgatggtttttg 28926481  T
Q  500 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    ||||||||||  |||| |||| |||||||||||||||||||| ||||||||||||||| |||||||    
T  28926482 cataaagcatccaatagagaactgtaagtaattatatcaggtggttgacctctatcatgcatctca 28926547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 410 - 565
Target Start/End: Complemental strand, 24731009 - 24730854
Alignment:
Q  410 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 509  Q
    |||| ||||| |||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24731009 agaacagtgtatgtgtacatatctggtcgaataccctggtctttcaaatttgttaataatgcaattgccttgtcaacatgatggtttttgcataaagcat 24730910  T
Q  510 ttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
      ||||||||||||||||| ||||||| |||| ||||||||||||||| |||||||    
T  24730909 ccaatatagaattgtaagttattatattaggtggttgacctctatcatgcatctca 24730854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 400 - 541
Target Start/End: Complemental strand, 29835379 - 29835238
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 499  Q
    ||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  29835379 tccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaattttgttaataacgcaattgccttgtcaacctgatggtttttg 29835280  T
Q  500 cataaagcatttaatatagaattgtaagtaattatatcaggt 541  Q
    ||||||||||  ||||||||| ||||||||||||||||||||    
T  29835279 cataaagcatccaatatagaactgtaagtaattatatcaggt 29835238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 400 - 541
Target Start/End: Complemental strand, 29894717 - 29894576
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 499  Q
    ||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  29894717 tccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaattttgttaataacgcaattgccttgtcaacctgatggtttttg 29894618  T
Q  500 cataaagcatttaatatagaattgtaagtaattatatcaggt 541  Q
    ||||||||||  ||||||||| ||||||||||||||||||||    
T  29894617 cataaagcatccaatatagaactgtaagtaattatatcaggt 29894576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 403 - 565
Target Start/End: Complemental strand, 29073924 - 29073762
Alignment:
Q  403 atcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcat 502  Q
    |||||| |||||||||| |||||  ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  29073924 atcaataagaatagtgtatgtgtgcatagttggtcgaataccttggtctttcaattttgttaataatgcaattgccttgtcaacctgatggtttttgcat 29073825  T
Q  503 aaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    |||||||  ||||||||| |||||||||||||||||||| ||  ||||||||||| |||||||    
T  29073824 aaagcatccaatatagaactgtaagtaattatatcaggtggtacacctctatcatgcatctca 29073762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 403 - 565
Target Start/End: Complemental strand, 29078688 - 29078526
Alignment:
Q  403 atcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcat 502  Q
    |||||| |||||||||| |||||  ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  29078688 atcaataagaatagtgtatgtgtgcatagttggtcgaataccttggtctttcaattttgttaataatgcaattgccttgtcaacctgatggtttttgcat 29078589  T
Q  503 aaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    |||||||  ||||||||| |||||||||||||||||||| ||  ||||||||||| |||||||    
T  29078588 aaagcatccaatatagaactgtaagtaattatatcaggtggtacacctctatcatgcatctca 29078526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 403 - 565
Target Start/End: Complemental strand, 29106497 - 29106335
Alignment:
Q  403 atcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcat 502  Q
    |||||| |||||||||| |||||  ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  29106497 atcaataagaatagtgtatgtgtgcatagttggtcgaataccttggtctttcaattttgttaataatgcaattgccttgtcaacctgatggtttttgcat 29106398  T
Q  503 aaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    |||||||  ||||||||| |||||||||||||||||||| ||  ||||||||||| |||||||    
T  29106397 aaagcatccaatatagaactgtaagtaattatatcaggtggtacacctctatcatgcatctca 29106335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 400 - 541
Target Start/End: Complemental strand, 29866813 - 29866672
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 499  Q
    ||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||  ||||||||||||    
T  29866813 tccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaaatttgttaataacgcaattgccttgtcaacctgatggtttttg 29866714  T
Q  500 cataaagcatttaatatagaattgtaagtaattatatcaggt 541  Q
    ||||||||||  ||||||||| ||||||||||||||||||||    
T  29866713 cataaagcatccaatatagaactgtaagtaattatatcaggt 29866672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 400 - 565
Target Start/End: Original strand, 30061830 - 30061995
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 499  Q
    |||| ||||||||||||||| |||||||||||| ||| | |||||||| ||||||||||||| ||||||||  ||||||||||||| |||||||  ||||    
T  30061830 tccaccaattagaatagtgtatgtgtaaatattcggttgaataccctgatctttcaattttgataataatgtgattgccttgtcaagatgatggcgtttg 30061929  T
Q  500 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    ||||||||||  ||||||||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  30061930 cataaagcatccaatatagaattgtaagtaattatattaggtggttgacctctatcatgcatctca 30061995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 410 - 565
Target Start/End: Original strand, 24890091 - 24890246
Alignment:
Q  410 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 509  Q
    ||||| |||| |||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24890091 agaatggtgtatgtgtacatatctggtcgaataccctggtctttcaaatttgttaataatgcaattgccttgtcaacatgatggtttttgcataaagcat 24890190  T
Q  510 ttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
      ||||||||| ||||||||| ||||| |||| | ||||||||||||| |||||||    
T  24890191 ccaatatagaactgtaagtaactatattaggtggctgacctctatcatgcatctca 24890246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 400 - 565
Target Start/End: Original strand, 29211228 - 29211393
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 499  Q
    ||||||||| |||||||||| |||||  ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||   ||||| |||||    
T  29211228 tccatcaataagaatagtgtatgtgtgcatatttggtcgaataccttggtctttcaattttgttaataatgcaactgccttgtcaacccgatgggttttg 29211327  T
Q  500 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    ||||||||||  ||||||||| ||||||||| ||||| |||| ||||||||||||||| |||||||    
T  29211328 cataaagcatccaatatagaactgtaagtaactatattaggtggttgacctctatcatgcatctca 29211393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 400 - 562
Target Start/End: Original strand, 24263587 - 24263749
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 499  Q
    ||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||    
T  24263587 tccatcaataagaatagtgtatgtgtacatatttggtcgaataccctggtctttcaattttattaataatgcaattgccttgtcaaccagatggtttttg 24263686  T
Q  500 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatc 562  Q
    ||||| ||||  ||||||||| |||| || |||||||||||| |||| |||| ||||| ||||    
T  24263687 cataaggcatccaatatagaactgtacgtgattatatcaggttgttgccctcgatcatgcatc 24263749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 400 - 565
Target Start/End: Complemental strand, 29905803 - 29905638
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 499  Q
    ||||||||| ||||| |||| |||||| ||||||||| | |||||| ||||||||||||||||||||||||  |||||||||||||  |||| |||||||    
T  29905803 tccatcaataagaatggtgtatgtgtacatatttggttgaatacccaggtctttcaattttgttaataatgtgattgccttgtcaacctgatagtttttg 29905704  T
Q  500 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    ||||||||||  ||||||||| | |||||||||||||||||| | ||||||||||||| |||||||    
T  29905703 cataaagcatccaatatagaactctaagtaattatatcaggtggctgacctctatcatgcatctca 29905638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 216 - 407
Target Start/End: Original strand, 30061508 - 30061705
Alignment:
Q  216 atgtagaattcaagaaaaaccttacctagttctgatcttacaatacaccactcacaatcatttcacgaag---tctcttcgccttatcgttatcattttt 312  Q
    |||||||  |||||||||| |||||||||||||||||||||| || ||| ||||||||||||||| ||||   |||||||||||||||  | ||||||||    
T  30061508 atgtagacatcaagaaaaatcttacctagttctgatcttacactagacctctcacaatcatttcatgaagaagtctcttcgccttatcaatttcattttt 30061607  T
Q  313 atcaaacagagaacgtataattattccgtaagtcacagcatttggatagcaattattgtc---cttcatttttgatagcaaagccaaggctccatcaa 407  Q
    |||||||| ||||| |||||||||| ||| |||  |||||||||||| ||||||||||||   | ||||||||||||||| |||||||||| ||||||    
T  30061608 atcaaacaaagaacatataattatttcgttagttgcagcatttggattgcaattattgtccgtcgtcatttttgatagcatagccaaggcttcatcaa 30061705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 400 - 565
Target Start/End: Original strand, 30126890 - 30127055
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 499  Q
    ||||||||| |||||||||| |||||| | | ||||| | |||||||||| ||| ||||| ||||| ||||||||||| |||||||  ||||||||||||    
T  30126890 tccatcaataagaatagtgtatgtgtacacacttggttgaataccctggtttttaaatttcgttaacaatgcaattgctttgtcaacctgatggtttttg 30126989  T
Q  500 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    ||||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  30126990 cataaagcatccaatatagaattgtaaataattatatcaggtggttgacctctatcatgcatctca 30127055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 410 - 565
Target Start/End: Complemental strand, 29882589 - 29882434
Alignment:
Q  410 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 509  Q
    |||||||||| |||||  |||| |||||| ||||| ||| |||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  29882589 agaatagtgtatgtgttcatatctggtcgaataccttggcctttcaattttgttaataatgcaattgctttgtcaacatgatgttttttgcataaagcat 29882490  T
Q  510 ttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
      |||||||||||||| ||||||||||||||| |||| |||| ||||| |||||||    
T  29882489 ccaatatagaattgtaggtaattatatcaggttgttgccctcgatcatgcatctca 29882434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 410 - 565
Target Start/End: Complemental strand, 29909745 - 29909590
Alignment:
Q  410 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 509  Q
    |||||||||| |||||  |||| |||||| ||||| ||| |||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  29909745 agaatagtgtatgtgttcatatctggtcgaataccttggcctttcaattttgttaataatgcaattgctttgtcaacatgatgttttttgcataaagcat 29909646  T
Q  510 ttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
      |||||||||||||| ||||||||||||||| |||| |||| ||||| |||||||    
T  29909645 ccaatatagaattgtaggtaattatatcaggttgttgccctcgatcatgcatctca 29909590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 412 - 557
Target Start/End: Original strand, 24886413 - 24886557
Alignment:
Q  412 aatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgcc-ttgtcaatatgatggtttttgcataaagcatt 510  Q
    |||||||| |||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||||||||     
T  24886413 aatagtgtatgtgtacatatctggtcgaataccctggtctttcaattttgttaataatgcaattgcctttgtc-acatgatggttttt-cataaagcatc 24886510  T
Q  511 taatatagaattgtaagtaattatatcaggtagttgacctctatcat 557  Q
     |||||||||||||||||||||||||||||| | |||||||||||||    
T  24886511 caatatagaattgtaagtaattatatcaggtggctgacctctatcat 24886557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 400 - 565
Target Start/End: Original strand, 30118576 - 30118741
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 499  Q
    ||||||||| ||||| |||| |||||| ||||||||| | || ||| ||||||||||||||||||||||||  |||||||||||||  |||| |||||||    
T  30118576 tccatcaataagaatggtgtatgtgtacatatttggttgaattcccaggtctttcaattttgttaataatgtgattgccttgtcaacctgatagtttttg 30118675  T
Q  500 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    ||||||||||  ||||||||| | |||||||||||||||||| | ||||||||||||| |||||||    
T  30118676 cataaagcatccaatatagaactctaagtaattatatcaggtggctgacctctatcatgcatctca 30118741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 410 - 565
Target Start/End: Complemental strand, 29903400 - 29903245
Alignment:
Q  410 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 509  Q
    ||||| |||| |||||  ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||  |||||| ||||||||||||||||    
T  29903400 agaatggtgtatgtgttcatatttggtcgaataccctggtctttcaattttgttaataacgcaattgctttgccagcatgatgttttttgcataaagcat 29903301  T
Q  510 ttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
      |||||||||||||| ||||||||||||||| |||| |||| ||||| |||||||    
T  29903300 ccaatatagaattgtaggtaattatatcaggttgttgccctcgatcatgcatctca 29903245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 410 - 565
Target Start/End: Original strand, 29357824 - 29357979
Alignment:
Q  410 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 509  Q
    |||||||||| |||||| ||||||||| | |||||||||| |||||  | ||||||||| |||||||| |||||||  ||||||||||||||||||||||    
T  29357824 agaatagtgtatgtgtacatatttggttgaataccctggtttttcatctgtgttaataacgcaattgcattgtcaacctgatggtttttgcataaagcat 29357923  T
Q  510 ttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
      ||||||||| ||||||||| ||||| |||| ||||||||||||||| |||||||    
T  29357924 ccaatatagaactgtaagtaactatattaggtggttgacctctatcatgcatctca 29357979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 404 - 563
Target Start/End: Complemental strand, 29929433 - 29929274
Alignment:
Q  404 tcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcata 503  Q
    ||||| |||||||||| |||||| | | ||||| | |||||||||||||| ||||| ||||| ||||||||||| |||||||  |||||| |||||||||    
T  29929433 tcaataagaatagtgtatgtgtacacacttggttgaataccctggtctttgaatttcgttaacaatgcaattgctttgtcaacctgatgggttttgcata 29929334  T
Q  504 aagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatct 563  Q
    |||||| |||||||||||||||||||| ||||| ||||  |  ||||||||||| |||||    
T  29929333 aagcatctaatatagaattgtaagtaactatattaggtgctacacctctatcatgcatct 29929274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 410 - 563
Target Start/End: Complemental strand, 29116415 - 29116262
Alignment:
Q  410 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 509  Q
    |||||| ||| |||||| ||||||||| | ||||||| |||||||||||| ||||| ||||||||||| |||||||  |||||| |||||||||||||||    
T  29116415 agaatactgtatgtgtacatatttggttgaatacccttgtctttcaatttcgttaacaatgcaattgctttgtcaacttgatggattttgcataaagcat 29116316  T
Q  510 ttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatct 563  Q
     |||||||||||||||||||  ||||  |||| ||  ||||||||||| |||||    
T  29116315 ctaatatagaattgtaagtacgtatagtaggtggtacacctctatcatgcatct 29116262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 400 - 563
Target Start/End: Complemental strand, 29085182 - 29085019
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 499  Q
    ||||||||| |||||||||| |||||| ||  ||||| | |||||||||||||| ||||| ||||  ||||||||||| |||||||  |||||| |||||    
T  29085182 tccatcaataagaatagtgtatgtgtacatgcttggttgaataccctggtctttaaatttcgttatcaatgcaattgctttgtcaacttgatgggttttg 29085083  T
Q  500 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatct 563  Q
     ||||||||| || ||||||||||||||||| ||||| |||| ||  ||||||||||| |||||    
T  29085082 aataaagcatctattatagaattgtaagtaagtatattaggtggtacacctctatcatgcatct 29085019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 400 - 565
Target Start/End: Original strand, 29348433 - 29348598
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 499  Q
    ||||||||| |||||||||| |||||| |||| |||| | || || |  |||||||  || ||||| || ||||||||||||||||  ||||||||||||    
T  29348433 tccatcaataagaatagtgtatgtgtacatatctggttgaattccttcatctttcatcttcgttaacaacgcaattgccttgtcaacctgatggtttttg 29348532  T
Q  500 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    ||||||||||  ||||||||||||||||||||| ||||| || ||  ||||||||||| |||||||    
T  29348533 cataaagcatccaatatagaattgtaagtaattttatcatgtggtacacctctatcatgcatctca 29348598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 400 - 563
Target Start/End: Complemental strand, 29889894 - 29889731
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 499  Q
    ||||||||| |||||||||| ||| || | ||||||| | |||| ||||||||| ||||| ||| | ||||||||||  |||||||  |||||| |||||    
T  29889894 tccatcaataagaatagtgtatgtttacacatttggttgaatactctggtctttaaatttcgttgacaatgcaattgttttgtcaacctgatgggttttg 29889795  T
Q  500 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatct 563  Q
    |||||||||| |||||||||||||||||| | ||||| |||| ||  ||||||||||| |||||    
T  29889794 cataaagcatctaatatagaattgtaagtgactatattaggtggtacacctctatcatgcatct 29889731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 473 - 565
Target Start/End: Complemental strand, 29898168 - 29898076
Alignment:
Q  473 attgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||| |||| |||||||||| |||| ||||||||||||||| |||||||    
T  29898168 attgccttgtcaacctgatggtttttgcataaagcattcaatatagaactgtacgtaattatattaggtggttgacctctatcatgcatctca 29898076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 422 - 557
Target Start/End: Complemental strand, 29946579 - 29946444
Alignment:
Q  422 gtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaat 521  Q
    ||||| ||| ||||| | ||| |||||||||| | ||||||||| ||| ||||||||||||||| || || ||| ||||||||| |||  |||||||| |    
T  29946579 gtgtacatacttggttgaatatcctggtctttaagttttgttaaaaatacaattgccttgtcaacatcatagttcttgcataaaacatccaatatagagt 29946480  T
Q  522 tgtaagtaattatatcaggtagttgacctctatcat 557  Q
    ||||||||||||||| |||| |||||||||||||||    
T  29946479 tgtaagtaattatattaggtggttgacctctatcat 29946444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 442 - 563
Target Start/End: Complemental strand, 29099465 - 29099344
Alignment:
Q  442 accctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggt 541  Q
    ||||| |||||| ||||| ||||| ||||||||||| |||||||  |||||| ||||||||||||||| |||||||||||||||||||  ||||| ||||    
T  29099465 acccttgtctttaaatttcgttaacaatgcaattgctttgtcaacttgatgggttttgcataaagcatctaatatagaattgtaagtacatatattaggt 29099366  T
Q  542 agttgacctctatcattcatct 563  Q
     ||  ||||||||||| |||||    
T  29099365 ggtacacctctatcatgcatct 29099344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 461 - 565
Target Start/End: Original strand, 29366317 - 29366421
Alignment:
Q  461 gttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattca 560  Q
    ||||| || ||||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||||| ||||| || ||  ||||||||||| ||    
T  29366317 gttaacaacgcaattgccttgtcaacctgatggtttttgcataaagcatccaatatagaattgtaagtaattttatcatgtggtacacctctatcatgca 29366416  T
Q  561 tctca 565  Q
    |||||    
T  29366417 tctca 29366421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 457 - 565
Target Start/End: Complemental strand, 29876932 - 29876824
Alignment:
Q  457 ttttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatca 556  Q
    |||| ||||||||||||| | ||| |||| ||||||  |||||||||||||||  ||||||||||||||||||||||||| |||| |||| |||||||||    
T  29876932 ttttcttaataatgcaatcgtcttctcaacatgatgaattttgcataaagcatacaatatagaattgtaagtaattatattaggtggttggcctctatca 29876833  T
Q  557 ttcatctca 565  Q
    | |||||||    
T  29876832 tgcatctca 29876824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 465 - 565
Target Start/End: Original strand, 30999838 - 30999938
Alignment:
Q  465 ataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctc 564  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||  ||||||||| ||||| ||| ||||| |||| ||||||||||||||| ||||||    
T  30999838 ataatgcaattgcctggtcaacacgatggtttttgcataaagcatccaatatagaactgtaaataactatattaggtggttgacctctatcatgcatctc 30999937  T
Q  565 a 565  Q
    |    
T  30999938 a 30999938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 29894978 - 29894842
Alignment:
Q  271 aatcatttcacgaagtctcttcgccttatcgttatcatttttatcaaacagagaacgtataattattccgtaagtcacagcatttggatagcaattattg 370  Q
    |||||||||||||||| ||| ||||||||| || |||| |||||||||||| ||||| || |||||| | ||||| ||||||| ||||  |||| |||||    
T  29894978 aatcatttcacgaagtttctccgccttatcattttcatctttatcaaacagggaacggatgattatttcataagttacagcatctggaatgcaactattg 29894879  T
Q  371 tccttcatttttgatagcaaagccaaggctccatcaa 407  Q
    || ||||||||||| | ||||| ||| ||| ||||||    
T  29894878 tctttcatttttgacaacaaagtcaatgcttcatcaa 29894842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 30061350 - 30061455
Alignment:
Q  57 tatccctcgtgttggaactcaccaatatatcattttgtttagtataacaacacttaacaaataaaacaacaataataaaggcagtctatcccattaggtg 156  Q
    ||||||||  ||||||||||||| || |||||||||||||||||||| |||| ||||| ||| |||||||||||| ||| ||| ||| |||||||||| |    
T  30061350 tatccctcacgttggaactcaccgatctatcattttgtttagtataaaaacagttaac-aatgaaacaacaataacaaaagcattctttcccattaggcg 30061448  T
Q  157 aagcagc 163  Q
    |||||||    
T  30061449 aagcagc 30061455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 282 - 407
Target Start/End: Complemental strand, 29867063 - 29866938
Alignment:
Q  282 gaagtctcttcgccttatcgttatcatttttatcaaacagagaacgtataattattccgtaagtcacagcatttggatagcaattattgtccttcatttt 381  Q
    ||||| ||| ||||||||| || |||| |||||||||||||||||| || |||||| | ||||| |  ||||||||| ||||| ||||||| ||||||||    
T  29867063 gaagtttctccgccttatcattttcatctttatcaaacagagaacggatgattatttcataagttaaggcatttggaaagcaactattgtctttcatttt 29866964  T
Q  382 tgatagcaaagccaaggctccatcaa 407  Q
    ||| | ||||||||| ||| ||||||    
T  29866963 tgacaacaaagccaatgcttcatcaa 29866938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 400 - 528
Target Start/End: Original strand, 29949732 - 29949860
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 499  Q
    ||||||||  || ||||||| ||| || ||||||||  | || || |||||||| |  ||| ||||||||||||| ||||||||||  ||||||||||||    
T  29949732 tccatcaacaagtatagtgtatgtatacatatttggctgaattccttggtcttttatcttttttaataatgcaatcgccttgtcaacctgatggtttttg 29949831  T
Q  500 cataaagcatttaatatagaattgtaagt 528  Q
    |||||||||| ||||| ||||||||||||    
T  29949832 cataaagcatctaataaagaattgtaagt 29949860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 471 - 565
Target Start/End: Original strand, 24271853 - 24271947
Alignment:
Q  471 caattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    |||||||||||||||  |||||||||||||||||| |||  ||||||||| |||| || |||||||||||| |||| |||| ||||| |||||||    
T  24271853 caattgccttgtcaacctgatggtttttgcataaatcatccaatatagaactgtacgtgattatatcaggttgttgccctcgatcatgcatctca 24271947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 443 - 565
Target Start/End: Complemental strand, 30149648 - 30149526
Alignment:
Q  443 ccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggta 542  Q
    ||||||||||| |  ||| ||||||||||||||||| ||||||  |||||||||||||| ||  |||  |||| |||||||||||| ||||| || | |     
T  30149648 ccctggtctttgatcttttttaataatgcaattgccctgtcaacctgatggtttttgcacaatccatcaaataaagaattgtaagtgattatgtcggttg 30149549  T
Q  543 gttgacctctatcattcatctca 565  Q
    ||||||||||||||| |||||||    
T  30149548 gttgacctctatcatgcatctca 30149526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 412 - 565
Target Start/End: Complemental strand, 25451270 - 25451117
Alignment:
Q  412 aatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcattt 511  Q
    |||||||| |||||| | ||||||| | ||||||| |||||| |||| | | |||||| ||||||| |  ||||  ||||| |||||  |||||||||      
T  25451270 aatagtgtatgtgtacacatttggttgaatacccttgtctttaaattctttaaataattcaattgcttcttcaacctgatgttttttcaataaagcatcc 25451171  T
Q  512 aatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    ||||||||| ||||||||| |||||  ||| ||||||||||||||| |||||||    
T  25451170 aatatagaactgtaagtaaatatatttggtggttgacctctatcatgcatctca 25451117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 292 - 407
Target Start/End: Complemental strand, 29887701 - 29887586
Alignment:
Q  292 cgccttatcgttatcatttttatcaaacagagaacgtataattattccgtaagtcacagcatttggatagcaattattgtccttcatttttgatagcaaa 391  Q
    ||||||||| || ||||  ||||||||||||||||| || |||||| | ||||| |  ||||||||| ||||| ||||||| ||||||||||| | ||||    
T  29887701 cgccttatcattttcatcattatcaaacagagaacggatgattatttcataagttaaggcatttggaaagcaactattgtctttcatttttgacaacaaa 29887602  T
Q  392 gccaaggctccatcaa 407  Q
    ||||| ||| ||||||    
T  29887601 gccaatgcttcatcaa 29887586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 467 - 533
Target Start/End: Original strand, 16702057 - 16702123
Alignment:
Q  467 aatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaatta 533  Q
    ||||||||||||||||||| |||||||||||| |||||||||| |||||  ||||||||||| ||||    
T  16702057 aatgcaattgccttgtcaacatgatggtttttacataaagcatgtaataaggaattgtaagtgatta 16702123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 311 - 407
Target Start/End: Complemental strand, 29835600 - 29835504
Alignment:
Q  311 ttatcaaacagagaacgtataattattccgtaagtcacagcatttggatagcaattattgtccttcatttttgatagcaaagccaaggctccatcaa 407  Q
    ||||||||||||||||| || |||||| | ||||| |  ||||||||| ||||| ||||||| ||||||||||| | ||||||||| ||| ||||||    
T  29835600 ttatcaaacagagaacggatgattatttcataagttaaggcatttggaaagcaactattgtctttcatttttgacaacaaagccaatgcttcatcaa 29835504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 528
Target Start/End: Original strand, 29953542 - 29953657
Alignment:
Q  413 atagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcattta 512  Q
    ||||||| ||| || ||||||||  | || || ||||||||||  ||  ||||||||||||| ||||||||||  |||||||||||||| |||||||  |    
T  29953542 atagtgtatgtatacatatttggctgaatcccttggtctttcatcttctttaataatgcaatcgccttgtcaacctgatggtttttgcacaaagcatcca 29953641  T
Q  513 atatagaattgtaagt 528  Q
    ||| ||||||||||||    
T  29953642 ataaagaattgtaagt 29953657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 400 - 458
Target Start/End: Original strand, 24271799 - 24271857
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaatt 458  Q
    ||||||||| |||||||||| |||| | ||||||||||| |||||||||||||||||||    
T  24271799 tccatcaataagaatagtgtatgtgaacatatttggtcgaataccctggtctttcaatt 24271857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 549
Target Start/End: Complemental strand, 30053543 - 30053442
Alignment:
Q  448 gtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttga 547  Q
    ||||||||  || ||||| || ||||||||||||||||  |||||||||||||| ||  ||| ||||| |||||||||||| ||||||| || | |||||    
T  30053543 gtctttcatcttcgttaacaacgcaattgccttgtcaacctgatggtttttgcacaatccatataataaagaattgtaagtgattatattagctggttga 30053444  T
Q  548 cc 549  Q
    ||    
T  30053443 cc 30053442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 384
Target Start/End: Original strand, 24271559 - 24271651
Alignment:
Q  292 cgccttatcgttatcatttttatcaaacagagaacgtataattattccgtaagtcacagcatttggatagcaattattgtccttcatttttga 384  Q
    ||||||||| || ||||  ||||||||||||||||| || |||||| | ||||| ||||||||||||  ||||  |||||| |||||||||||    
T  24271559 cgccttatcattttcatcgttatcaaacagagaacggatgattatttcataagttacagcatttggaatgcaacaattgtctttcatttttga 24271651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 485
Target Start/End: Complemental strand, 29912126 - 29912051
Alignment:
Q  410 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaa 485  Q
    ||||| |||| |||||  |||| |||||| ||||| ||| ||||||||||||||||||||| |||||| |||||||    
T  29912126 agaatggtgtatgtgttcatatctggtcgaataccttggcctttcaattttgttaataatgtaattgctttgtcaa 29912051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 485
Target Start/End: Complemental strand, 29914146 - 29914071
Alignment:
Q  410 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaa 485  Q
    |||||||||| |||||| | | ||||| | |||||||||||||| ||||| ||||| ||||||||||| |||||||    
T  29914146 agaatagtgtatgtgtacacacttggttgaataccctggtctttaaatttcgttaacaatgcaattgctttgtcaa 29914071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 407
Target Start/End: Original strand, 30126650 - 30126765
Alignment:
Q  292 cgccttatcgttatcatttttatcaaacagagaacgtataattattccgtaagtcacagcatttggatagcaattattgtccttcatttttgatagcaaa 391  Q
    ||||||||| || |||| |||||||||||||||||| || |||||| | ||||| ||| | ||||||  |||| ||||||| ||||||| | | | ||||    
T  30126650 cgccttatcattttcatctttatcaaacagagaacggatgattatttcataagttacaacgtttggaatgcaactattgtctttcatttctaacaacaaa 30126749  T
Q  392 gccaaggctccatcaa 407  Q
    ||||| ||| ||||||    
T  30126750 gccaatgcttcatcaa 30126765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 528
Target Start/End: Original strand, 15727090 - 15727152
Alignment:
Q  466 taatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagt 528  Q
    |||| |||||||||||||||  |||||||||||||||||||||| || ||  |||||||||||    
T  15727090 taatacaattgccttgtcaacgtgatggtttttgcataaagcatctattaacgaattgtaagt 15727152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 251 - 407
Target Start/End: Complemental strand, 29085466 - 29085307
Alignment:
Q  251 tcttacaatacaccactcacaatcatttcacgaa---gtctcttcgccttatcgttatcatttttatcaaacagagaacgtataattattccgtaagtca 347  Q
    |||||||||| ||| |||  ||||||||||||||   || ||| ||||||||| || ||||| ||||| ||||||||||| ||  ||||| | ||||| |    
T  29085466 tcttacaatagacctctcgtaatcatttcacgaaaaagtttctccgccttatcattttcattgttatccaacagagaacggatggttatttcataagtta 29085367  T
Q  348 cagcatttggatagcaattattgtccttcatttttgatagcaaagccaaggctccatcaa 407  Q
    | || ||||||  |||| || |||| ||||||||||| | ||||| ||| ||| ||||||    
T  29085366 cggcgtttggaatgcaactactgtctttcatttttgacaacaaagacaatgcttcatcaa 29085307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 565
Target Start/End: Complemental strand, 30135250 - 30135124
Alignment:
Q  440 ataccctggtctttcaattttgttaataatgcaattgccttgtcaata-tgatggtttttgcataaagcatttaatatagaattgtaagtaattatatca 538  Q
    ||||| |||||||| |  || ||||||||||  |||||||||||||   |||||||||||||| |||||||  |||| |||||||||||| || | || |    
T  30135250 ataccttggtctttgatcttcgttaataatgtgattgccttgtcaaacctgatggtttttgcacaaagcatccaataaagaattgtaagtgatcacatta 30135151  T
Q  539 ggtagttgacctctatcattcatctca 565  Q
    |   |||||||||| |||| |||||||    
T  30135150 gcaggttgacctctttcatgcatctca 30135124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 407
Target Start/End: Original strand, 24263337 - 24263462
Alignment:
Q  282 gaagtctcttcgccttatcgttatcatttttatcaaacagagaacgtataattattccgtaagtcacagcatttggatagcaattattgtccttcatttt 381  Q
    ||||| ||| ||||||||| || |||| |||||||||||||||||  || |||||| | ||||| |  || | ||||  |||| ||||||| ||||||||    
T  24263337 gaagtttctccgccttatcattttcatctttatcaaacagagaacagatgattatttcataagtaatggcgtctggaatgcaactattgtctttcatttt 24263436  T
Q  382 tgatagcaaagccaaggctccatcaa 407  Q
    ||| | ||||| ||| ||| ||||||    
T  24263437 tgacaacaaagacaatgcttcatcaa 24263462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 565
Target Start/End: Original strand, 24739103 - 24739195
Alignment:
Q  473 attgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    |||||||||||||  |||||||||||||| |||||||  ||||  ||||||||||| || | |||||   |||| ||||||| || |||||||    
T  24739103 attgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagtgatcacatcagcaggttggcctctattatgcatctca 24739195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 28926132 - 28926208
Alignment:
Q  282 gaagtctcttcgccttatcgttatcatttttatcaaacagagaacgtataattattccgtaagtcacagcatttgga 358  Q
    ||||| ||| ||||||||| || |||| |||||||||||||||||| || |||||| | ||||| || || ||||||    
T  28926132 gaagtttctccgccttatcattttcatctttatcaaacagagaacggatgattatttcataagtaacggcgtttgga 28926208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 400 - 565
Target Start/End: Complemental strand, 4301 - 4136
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttg 499  Q
    ||||| ||| |||||||||| |||||| ||||||||| | | |||||||||||||||||||||||||||||||||||||||||||    |||||||||||    
T  4301 tccattaataagaatagtgtatgtgtacatatttggttgaagaccctggtctttcaattttgttaataatgcaattgccttgtcacctggatggtttttg 4202  T
Q  500 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    ||||||||||  |||| |||| |||||||||||||||||||| ||||||||||||||| |||||||    
T  4201 cataaagcatccaatagagaactgtaagtaattatatcaggtggttgacctctatcatgcatctca 4136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 4551 - 4475
Alignment:
Q  282 gaagtctcttcgccttatcgttatcatttttatcaaacagagaacgtataattattccgtaagtcacagcatttgga 358  Q
    ||||| ||| ||||||||| || |||| |||||||||||||||||| || |||||| | ||||| || || ||||||    
T  4551 gaagtttctccgccttatcattttcatctttatcaaacagagaacggatgattatttcataagtaacggcgtttgga 4475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 410 - 565
Target Start/End: Complemental strand, 22497 - 22342
Alignment:
Q  410 agaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 509  Q
    ||||| |||| |||||  |||| |||||| ||||| ||| ||||||||||||||||||||| |||||| ||||| | |||||| ||||||||||||||||    
T  22497 agaatggtgtatgtgttcatatctggtcgaataccttggcctttcaattttgttaataatgtaattgctttgtccacatgatgttttttgcataaagcat 22398  T
Q  510 ttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
      |||||||||||||||||||||||||||||| |||| |||| || || |||||||    
T  22397 ccaatatagaattgtaagtaattatatcaggttgttgccctcgataatgcatctca 22342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 446 - 564
Target Start/End: Original strand, 24219116 - 24219234
Alignment:
Q  446 tggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagtt 545  Q
    |||||||| | ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||  |||| |||||||||||||||||||| |||| |||    
T  24219116 tggtctttaagttttgttaacaattcaattgccttgtcaacatgatggtttttgcataaagcatccaataaagaattgtaagtaattatattaggtggtt 24219215  T
Q  546 gacctctatcattcatctc 564  Q
    |||||||||||| ||||||    
T  24219216 gacctctatcatgcatctc 24219234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 473 - 566
Target Start/End: Complemental strand, 24226911 - 24226818
Alignment:
Q  473 attgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctcac 566  Q
    |||||||||||||  |||||||||||||| ||  ||| ||||| |||||||||||| ||||| | || | ||||||||||||||| ||||||||    
T  24226911 attgccttgtcaacctgatggtttttgcacaatccatctaataaagaattgtaagtgattatgttagctggttgacctctatcatgcatctcac 24226818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 537
Target Start/End: Complemental strand, 33998037 - 33997967
Alignment:
Q  467 aatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatc 537  Q
    |||| |||||||| ||| | |||||| ||||||||||||||||  |||| |||||| ||||| ||||||||    
T  33998037 aatgtaattgcctggtcgagatgatgatttttgcataaagcatgcaataaagaattataagtgattatatc 33997967  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 528
Target Start/End: Complemental strand, 16351214 - 16351086
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaa-taatgcaattgccttgtcaatatgatggttttt 498  Q
    ||||||||| || ||| ||| |||| | ||||||||| | || || || ||||| |||||| |||| ||||||||| |||||||||| ||| ||||||||    
T  16351214 tccatcaataagtatattgtatgtgcacatatttggttgaatgccatgttcttt-aattttcttaactaatgcaatagccttgtcaacatgttggttttt 16351116  T
Q  499 gcataaagcatttaatatagaattgtaagt 528  Q
    ||| ||| ||| ||  | ||||||||||||    
T  16351115 gcagaaaacatctatcaaagaattgtaagt 16351086  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 337
Target Start/End: Original strand, 24208752 - 24208820
Alignment:
Q  269 acaatcatttcacgaagtctcttcgccttatcgttatcatttttatcaaacagagaacgtataattatt 337  Q
    |||||||||||||||||| |||| |||||||| |  |||  ||||||||||| |||| | |||||||||    
T  24208752 acaatcatttcacgaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatt 24208820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 426 - 557
Target Start/End: Original strand, 15062737 - 15062868
Alignment:
Q  426 aaatatttggtcggataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgta 525  Q
    |||||| |||| | |||||||  ||||| | ||||||||||||  |||||||||| |||| ||||| ||||||||||| ||||| |||||||||||||||    
T  15062737 aaatatctggttgaatacccttctctttaatttttgttaataacacaattgccttatcaacatgattgtttttgcatatagcatctaatatagaattgta 15062836  T
Q  526 agtaattatatcaggtagttgacctctatcat 557  Q
    ||||||||||| || | |||||||||||||||    
T  15062837 agtaattatattagatggttgacctctatcat 15062868  T

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Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 455 - 567
Target Start/End: Complemental strand, 10130246 - 10130134
Alignment:
Q  455 aattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctat 554  Q
    |||||| |||| ||||| ||||| ||||||| ||| || |||| |||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||    
T  10130246 aattttcttaacaatgcgattgctttgtcaacatggtgattttggcataaagcattcaataaagaattgtaagtaattatattaggttgttgacctctat 10130147  T
Q  555 cattcatctcact 567  Q
    ||  |||||||||    
T  10130146 cagacatctcact 10130134  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 466 - 565
Target Start/End: Complemental strand, 17251411 - 17251312
Alignment:
Q  466 taatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    ||||||||||||||| ||||  |||||| ||||||| ||||||| ||  | |||| ||||||| |||| || |||| ||||||||||||||| |||||||    
T  17251411 taatgcaattgccttatcaacttgatggcttttgcacaaagcatctatcaaagaagtgtaagttattacattaggtggttgacctctatcatgcatctca 17251312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 565
Target Start/End: Complemental strand, 19490374 - 19490249
Alignment:
Q  440 ataccctggtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcag 539  Q
    ||||| || ||||||| |||  ||| |||||| |||||||||||  | |||||  |||| |||||||||| ||||| |||||| ||||| |||| ||| |    
T  19490374 ataccttgatctttcattttgcttagtaatgctattgccttgtcggtttgatgacttttacataaagcatctaataaagaattataagttattacatcgg 19490275  T
Q  540 gtagttgacctctatcattcatctca 565  Q
    || | ||||||||||||  |||||||    
T  19490274 gtggctgacctctatcaagcatctca 19490249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 549
Target Start/End: Complemental strand, 41316358 - 41316274
Alignment:
Q  466 taatgcaattgccttgtcaatatgatggtttttgcataaagcattta-atatagaattgtaagtaattatatcaggtagttgacc 549  Q
    ||||||||| |||||||||| ||||| | ||||||||||||||| || ||| |||| |||||||   |||||||||| |||||||    
T  41316358 taatgcaatagccttgtcaagatgattgcttttgcataaagcatctatataaagaactgtaagtggatatatcaggtggttgacc 41316274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 537
Target Start/End: Complemental strand, 41198828 - 41198768
Alignment:
Q  477 ccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatc 537  Q
    ||||||||| |||||||||||| |||||||||| |||||  |||||| || | ||||||||    
T  41198828 ccttgtcaacatgatggtttttacataaagcatgtaataaggaattgcaactgattatatc 41198768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 501 - 565
Target Start/End: Original strand, 53532 - 53596
Alignment:
Q  501 ataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  53532 ataaagcatttaatatagaattgtaagtaattatattaggtggttgacctctatcatgcatctca 53596  T

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Target: scaffold0572 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 466 - 565
Target Start/End: Complemental strand, 3331 - 3232
Alignment:
Q  466 taatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    ||||||||| |||||||||| ||||||||||||||||||||||| || ||  ||||||||||| |||||||||| | ||||||| ||||||  |||||||    
T  3331 taatgcaatagccttgtcaacatgatggtttttgcataaagcatctattaatgaattgtaagtgattatatcagctggttgaccactatcacgcatctca 3232  T

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Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 400 - 528
Target Start/End: Complemental strand, 3643201 - 3643073
Alignment:
Q  400 tccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaa-taatgcaattgccttgtcaatatgatggttttt 498  Q
    ||||||||| || ||| ||| |||||| ||| ||||| | || ||||||||||| |||||| |||| ||||||||| || ||||||||||||||||||||    
T  3643201 tccatcaataagtatattgtatgtgtacatacttggttgaatgccctggtcttt-aattttcttaactaatgcaatagctttgtcaatatgatggttttt 3643103  T
Q  499 gcataaagcatttaatatagaattgtaagt 528  Q
    ||||||| ||| ||  | ||||||||||||    
T  3643102 gcataaaacatctatcaaagaattgtaagt 3643073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 549
Target Start/End: Complemental strand, 137537 - 137389
Alignment:
Q  401 ccatcaattagaatagtgtgtgtgtaaatatttggtcggataccctggtctttcaattttgttaa-taatgcaattgccttgtcaatatgatggtttttg 499  Q
    |||||||| || ||| ||| |||||| ||||||||| | || || |||||||| |||||| || | ||||||||| || ||||||| ||||| |||||||    
T  137537 ccatcaataagtatattgtatgtgtacatatttggttgaatgccttggtcttt-aattttcttgactaatgcaatagctttgtcaagatgattgtttttg 137439  T
Q  500 cataaagcatttaatatagaattgtaagtaattatatcaggtagttgacc 549  Q
    |||||||||| || || |||| |||| |||| ||| |||||| |||||||    
T  137438 cataaagcatctattaaagaactgtaggtaaatatgtcaggtggttgacc 137389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 563
Target Start/End: Original strand, 121382 - 121478
Alignment:
Q  467 aatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatct 563  Q
    |||||||||||||||||||  ||||| ||||||||||||||||  ||||  |||||||| || || ||||  |   ||||||||||||||| |||||    
T  121382 aatgcaattgccttgtcaacttgatgatttttgcataaagcatgcaataaggaattgtatgtgataatattggcaggttgacctctatcatgcatct 121478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 549
Target Start/End: Original strand, 104652 - 104722
Alignment:
Q  479 ttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacc 549  Q
    ||||||| ||||| ||||||||||||||||| || || |||| ||||||||| ||| | |||| |||||||    
T  104652 ttgtcaagatgattgtttttgcataaagcatctattaaagaactgtaagtaaatatgttaggtggttgacc 104722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 466 - 528
Target Start/End: Original strand, 126024 - 126086
Alignment:
Q  466 taatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagt 528  Q
    ||||||||| ||||||||||| |||||||||||||||||||||| || ||  |||||||||||    
T  126024 taatgcaatagccttgtcaatctgatggtttttgcataaagcatctattaaggaattgtaagt 126086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 549
Target Start/End: Complemental strand, 6294 - 6211
Alignment:
Q  466 taatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacc 549  Q
    |||| |||| |||||||||| |||||||||||||||||| |||| || || ||||||||||||   ||| |||||| |||||||    
T  6294 taatacaatagccttgtcaacatgatggtttttgcataatgcatctattaaagaattgtaagtgcatatgtcaggtggttgacc 6211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 565
Target Start/End: Original strand, 47804 - 47903
Alignment:
Q  466 taatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    ||||||||| ||||||||||  |||| |||||||||||||| ||||| || |||||||||||| | |||||  ||| |||| ||  |||||| |||||||    
T  47804 taatgcaatagccttgtcaacctgatagtttttgcataaagaatttattaaagaattgtaagtgaatatattgggtggttggccattatcatgcatctca 47903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 43201 - 43269
Alignment:
Q  481 gtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacc 549  Q
    ||||| |||||||||||||||||| |||| || || ||||||||||||   ||| |||||| |||||||    
T  43201 gtcaacatgatggtttttgcataatgcatctattaaagaattgtaagtgcatatgtcaggttgttgacc 43269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 528
Target Start/End: Original strand, 44262489 - 44262556
Alignment:
Q  461 gttaataatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagt 528  Q
    ||||||||||  |||||||||||||  |||||||||||||| |||||||  ||||  |||||||||||    
T  44262489 gttaataatgtgattgccttgtcaacctgatggtttttgcacaaagcatccaataaggaattgtaagt 44262556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 528
Target Start/End: Original strand, 1122 - 1183
Alignment:
Q  467 aatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagt 528  Q
    |||||||||||||||||||  ||||||||||| |||||||| | ||| |  |||||||||||    
T  1122 aatgcaattgccttgtcaacttgatggtttttacataaagcgtgtaagaaggaattgtaagt 1183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 509
Target Start/End: Complemental strand, 9782655 - 9782594
Alignment:
Q  448 gtctttcaattttgttaataatgcaattgccttgtcaatatgatggtttttgcataaagcat 509  Q
    ||||||||  |||||||| || ||||||||||||||||  |||||| ||||||| |||||||    
T  9782655 gtctttcatctttgttaacaacgcaattgccttgtcaacctgatggattttgcacaaagcat 9782594  T

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Target: scaffold0652 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 563
Target Start/End: Original strand, 1197 - 1293
Alignment:
Q  467 aatgcaattgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatct 563  Q
    |||||||||||||||||||  ||||| ||||| |||||||| | ||| |  ||||||||||| || | ||| |   ||||||||||||||| |||||    
T  1197 aatgcaattgccttgtcaacttgatgatttttacataaagcgtgtaagaaggaattgtaagtgatcacatcggcaggttgacctctatcatgcatct 1293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 565
Target Start/End: Original strand, 43777 - 43869
Alignment:
Q  473 attgccttgtcaatatgatggtttttgcataaagcatttaatatagaattgtaagtaattatatcaggtagttgacctctatcattcatctca 565  Q
    |||||||||||||  |||||||||||||| ||  ||| ||||| |||| ||||||| || || |  | | ||||||||||||||| |||||||    
T  43777 attgccttgtcaacctgatggtttttgcacaatccatctaataaagaactgtaagtgataatgttcgctggttgacctctatcatgcatctca 43869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 515
Target Start/End: Original strand, 31220 - 31264
Alignment:
Q  471 caattgccttgtcaatatgatggtttttgcataaagcatttaata 515  Q
    |||| |||||||||| |||||||||||| |||||||||| |||||    
T  31220 caatggccttgtcaacatgatggtttttacataaagcatgtaata 31264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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