View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_low_12 (Length: 554)
Name: NF7777_low_12
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Complemental strand, 11183661 - 11183165
Alignment:
| Q |
19 |
gtttcagagtgaccaagaattgttttccacaactggtgctgataccattgccattgtcaatagctttagcagcaatcaaactcttttctttgaagctttt |
118 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11183661 |
gtttcagagtgaccaagaattgttttccacacctggtgctgataccattgccattgttaatagctttagcagcaatcaaactcttttctttgaagctttt |
11183562 |
T |
|
| Q |
119 |
aaggcctcgatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaactttgttaatactgttagtcttgcta |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11183561 |
aaggcctccatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaactttgttaatactgttagtcttgcta |
11183462 |
T |
|
| Q |
219 |
ccaaagtcaccaaagattcatcagaagatggtattgttagctcataccaagtaatttaatacaagttgcataagaaaggtacctacgtacctataataaa |
318 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11183461 |
ccaaagtcaccaaagattcagcagaagatggtattgttagctcataccaagtaatttaatacaagttgcataagaaaggtacctacctacctataataaa |
11183362 |
T |
|
| Q |
319 |
gagtgtgttctaggggaacatacatgggcccttctcttgtgctggatatggtgatatattttgtaatatatggctattgaatgcagtgtgtttgtaagat |
418 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| ||||||| || ||||||||||||||||||||||| |
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| T |
11183361 |
gagtgtgttctaggggaacatacatgggctcttctcttgtgctgg--atggtgaaat--------------------tgaatgcagtgtgtttgtaagat |
11183284 |
T |
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| Q |
419 |
ctatttttgtaatctatggctattgataattatatgtcatcatattaataaaactaagtatctttcatttcttgtagtaactcttagatgagatatcatc |
518 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || | |||||||||||||||||||||||| |
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| T |
11183283 |
cta-ttttgtaatctatggctattgataattatatgtcatcatattaataaaactaagtatctttcatat-ttcttgtaactcttagatgagatatcatc |
11183186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 11190885 - 11190600
Alignment:
| Q |
19 |
gtttcagagtgaccaagaattgttttccacaactggtgctgataccattgccattgtcaatagctttagcagcaatcaaactcttttctttgaagctttt |
118 |
Q |
| |
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|||||||||||| ||||| | ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11190885 |
gtttcagagtgatcaagagcttttttccacacctggtgctgataccattgccattgttaatagctttagcagcaatcaaactcttttctttgaagctttt |
11190786 |
T |
|
| Q |
119 |
aaggcctcgatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaactttgttaatactgttagtcttgcta |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11190785 |
aaggcctccatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaactttgttaatactgttagtcttgcta |
11190686 |
T |
|
| Q |
219 |
ccaaagtcaccaaagattcatcagaagatggtattgttagctcataccaagtaatttaatacaagttgcataagaaaggtacctac |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |||| |
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| T |
11190685 |
ccaaagtcaccaaagattcatcagaagatggtattgttagctcattctaagtaatttaagacaagttgcataagaaaggtatctac |
11190600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 11172898 - 11173185
Alignment:
| Q |
19 |
gtttcagagtgaccaagaattgttttccacaactggtgctgataccattgccattgtcaatagctttagcagcaatcaaactcttttctttgaagctttt |
118 |
Q |
| |
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||||||||||||||||| ||||| |||||||| ||| || || || |||||||||||||| || || | || ||| |||||||||||||||||||||||| |
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| T |
11172898 |
gtttcagagtgaccaagtattgtcttccacaagtggcgcggacacgattgccattgtcaacagtttcaacaacaaccaaactcttttctttgaagctttt |
11172997 |
T |
|
| Q |
119 |
aaggcctcgatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaactttgttaat---actgttagtcttg |
215 |
Q |
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||||||||||||||||| ||| ||| ||| ||||||||||||| ||||||||||| |||||| ||| ||||||||||||||| | | | | |||| |
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| T |
11172998 |
aaggcctcgatgattaaaatgagtagaattaaagtgttaactggatctcaaggtgaaattagaaaacaatgtaactttgttaatggaaattctggccttg |
11173097 |
T |
|
| Q |
216 |
ctaccaaagtcaccaaagattcatcagaagatggtattgttagctcataccaagtaatttaatacaagttgcataagaaaggtaccta |
303 |
Q |
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| || |||||||| | ||| || ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11173098 |
ccacaaaagtcacaagagagtcgtcagaggatggtattgttagctcatactaagtaatttaatacaagttgcataagaaaggtaccta |
11173185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 11179000 - 11179173
Alignment:
| Q |
19 |
gtttcagagtgaccaagaattgttttccacaactggtgctgataccattgccattgtcaatagctttagcagcaatcaaactcttttctttgaagctttt |
118 |
Q |
| |
|
|||||| ||||||||||| | |||||||||| |||| |||| || ||| | ||||||||||| || || ||||||||||| ||||||||| |||| |
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| T |
11179000 |
gtttcaaagtgaccaagagcttttttccacaaatggttctgacactatttctattgtcaatagtttcgccaataatcaaactctcttctttgaaaatttt |
11179099 |
T |
|
| Q |
119 |
aaggcctcgatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaa |
192 |
Q |
| |
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|| || ||||| || ||||||||||||||||| ||||||||| ||||||||||| |||||||||| ||||| |
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| T |
11179100 |
gttgcttcaatgataaaaatgggtaatattggagttttaactggatctcaaggtgaaattagaacacaatgtaa |
11179173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 424
Target Start/End: Complemental strand, 11190527 - 11190478
Alignment:
| Q |
375 |
tattttgtaatatatggctattgaatgcagtgtgtttgtaagatctattt |
424 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||| ||||||| |
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| T |
11190527 |
tattttgtaatctatggctactgaatgcagtgtgtttgtaagttctattt |
11190478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 11097927 - 11098016
Alignment:
| Q |
59 |
gataccattgccattgtcaatagctttagcagcaatcaaactcttttctttgaagcttttaaggcctcgatgattaagatgggtaatatt |
148 |
Q |
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||||||||||| ||||| ||||||||||| ||||| ||| |||| |||||||| ||||| || || |||||||| |||| ||||||| |
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| T |
11097927 |
gataccattgctattgttaatagctttagtagcaaccaagctctcttctttgagaattttagggtgtccatgattaaaatggctaatatt |
11098016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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