View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7777_low_13 (Length: 471)
Name: NF7777_low_13
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 247 - 452
Target Start/End: Complemental strand, 26643522 - 26643317
Alignment:
| Q |
247 |
tacattatacaggattatgagaaattgtttgccataaagtttcctgcttgcacaattgcttccaagaggcacatagattcattcaccataatcttagatg |
346 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26643522 |
tacattatacaggattttgagaaattgtttgccataaagtttcctgcttgcacaattgcttccaagaggctcatagattcattcaccataatcttagatg |
26643423 |
T |
|
| Q |
347 |
ttcaagccgtggtatgttaccatgaattgttcttcattgcattacctttgaatttctataacatgcaaaaatatttatgttataattgtgtttttaggac |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26643422 |
ttcaagccgtggtatgttaccatgaattgttcttcattgcattacctttgaatttctataacatgcaaaaatatttatgttataattgtgtttttaggac |
26643323 |
T |
|
| Q |
447 |
ttttcc |
452 |
Q |
| |
|
|||||| |
|
|
| T |
26643322 |
ttttcc |
26643317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 31 - 183
Target Start/End: Complemental strand, 26643669 - 26643517
Alignment:
| Q |
31 |
gattgattaattgatgtccttgccgttgcatccaatgtgcttgaaatttcttgttttcttcaggattttgagttcaatgaattaaatgaaatcggcaagt |
130 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26643669 |
gattaattaattgatgtccttgccgttgcatccaatgtgcttgaaatttcttgttttcttcaggattttgagttcaatgaattaaatgaaatcggcaagt |
26643570 |
T |
|
| Q |
131 |
attttccacatggctatcatggcgttgataaggaaggaaggcctgttttcatt |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26643569 |
attttccacatggctatcatggcgttgataaggaaggaaggcctgtttacatt |
26643517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 92 - 430
Target Start/End: Complemental strand, 26671536 - 26671195
Alignment:
| Q |
92 |
aggattttgagttcaatgaattaaatgaaatcggcaagtattttccacatggctatcatggcgttgataaggaaggaaggcctgttttcattgaacttgt |
191 |
Q |
| |
|
||||||| |||||||| ||| |||||||| | | ||||||| ||||||||| ||||||| ||||||||||| ||||||||||||| ||||||| | |
|
|
| T |
26671536 |
aggatttcgagttcaacgaaataaatgaagttgttaagtattatccacatgggcatcatggtgttgataaggagggaaggcctgtttacattgaaagact |
26671437 |
T |
|
| Q |
192 |
tcgcgatagagtgg---ca---aaacttatgccagttactattagggagagatatgtgaagtacattatacaggattatgagaaattgtttgccataaag |
285 |
Q |
| |
|
| | | ||||| || |||||||||| |||||| | || ||| ||||||||||||||| | ||| || | |||||||| ||||| || ||| |
|
|
| T |
26671436 |
t---ggaaaagtggatccaaacaaacttatgcaagttacaactatggatagatatgtgaagtaccatgtacgcgagtttgagaaatcttttgcgattaag |
26671340 |
T |
|
| Q |
286 |
tttcctgcttgcacaattgcttccaagaggcacatagattcattcaccataatcttagatgttcaagccgtggtatgttaccatgaattgttcttcattg |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| |||| | |||||| |||||| |
|
|
| T |
26671339 |
tttcctgcttgcacaattgcttccaagaggcacatagattccagtaccacaatcttagatgttcaaggcgtggtatgttgccattatttgttcctcattg |
26671240 |
T |
|
| Q |
386 |
cattacctttgaatttctataacatgcaaaaatatttatgttata |
430 |
Q |
| |
|
|||| | ||||||||| |||| ||||||||||||||| ||||| |
|
|
| T |
26671239 |
cattgtttgtgaatttctttaacttgcaaaaatatttattttata |
26671195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 265 - 450
Target Start/End: Complemental strand, 26658247 - 26658062
Alignment:
| Q |
265 |
gagaaattgtttgccataaagtttcctgcttgcacaattgcttccaagaggcacatagattcattcaccataatcttagatgttcaagccgtggtatgtt |
364 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| | |||| |||| | |||||||||| | ||||||||| |
|
|
| T |
26658247 |
gagatattgtttgcggtaaagtttcctgcatgcacaattgcttccaagaggaacatagattcaataaccaaaatcatcgatgttcaaggcatggtatgtt |
26658148 |
T |
|
| Q |
365 |
accatgaattgttcttcattgcattacctttgaatttctataacatgcaaaaatattta-tgttataattgtgtttttaggactttt |
450 |
Q |
| |
|
| || |||| ||| | |||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
26658147 |
gcaattaatt-ttcctaattgcattgcctgtgaatttctataacatgcaaaaatatttacacttatagttgtgtttttaggactttt |
26658062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 280 - 382
Target Start/End: Complemental strand, 26664311 - 26664209
Alignment:
| Q |
280 |
ataaagtttcctgcttgcacaattgcttccaagaggcacatagattcattcaccataatcttagatgttcaagccgtggtatgttaccatgaattgttct |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| |||||| | | ||||||| |||||||||||||| |
|
|
| T |
26664311 |
ataaagtttcctgcttgcacaattgcttccaagaggcacatagattcaagcatcacaatcttagatcttcaaggcattgtatgttgccatgaattgttct |
26664212 |
T |
|
| Q |
380 |
tca |
382 |
Q |
| |
|
||| |
|
|
| T |
26664211 |
tca |
26664209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 26664504 - 26664412
Alignment:
| Q |
90 |
tcaggattttgagttcaatgaattaaatgaaatcggcaagtattttccacatggctatcatggcgttgataaggaaggaaggcctgttttcat |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
26664504 |
tcaggattttgagttcaatgaattaaatgaagttattaagtataatccacatggctatcatggtgttgataaggagggaagacctgttttcat |
26664412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 26658389 - 26658329
Alignment:
| Q |
126 |
caagtattttccacatggctatcatggcgttgataaggaaggaaggcctgttttcattgaa |
186 |
Q |
| |
|
|||||||| ||||||||| || ||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
26658389 |
caagtattatccacatggataccatggtgttgataagaaaggaaggcctgttttcattgaa |
26658329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 26643719 - 26643684
Alignment:
| Q |
1 |
atacaattatgaaggtaaattatgtaacgagattga |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
26643719 |
atacaattatgaaggtaaattatgtaacgagattga |
26643684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 90 - 364
Target Start/End: Complemental strand, 54781106 - 54780829
Alignment:
| Q |
90 |
tcaggattttgagttcaatgaattaaatgaaatcggcaagtattttccacatggctatcatggcgttgataaggaaggaaggcctgttttcattgaactt |
189 |
Q |
| |
|
|||||||||||||||||| || ||||||||| | | ||||||| |||||||||| ||||||| || |||||||||||||||||||||| |||||| |
|
|
| T |
54781106 |
tcaggattttgagttcaaggagttaaatgaagttgtgaagtattatccacatggccatcatggtgtagataaggaaggaaggcctgtttatattgaaaga |
54781007 |
T |
|
| Q |
190 |
gttcgcga--tagagtggca-aaacttatgccagttactattagggagagatatgtgaagtacattatacaggattatgagaaattgtttgccataaagt |
286 |
Q |
| |
|
|| | | | || | | ||||| |||| ||||| | || ||| |||||||| |||||| | | || || | |||||||| ||||| ||||||| |
|
|
| T |
54781006 |
cttggaaaagttgatccgaacaaactgatgcaggttacaactatggatagatatgtaaagtaccatgtgcaagagtttgagaaatcttttgcaataaagt |
54780907 |
T |
|
| Q |
287 |
ttcctgcttgcacaattgcttccaagaggcacatagattcattcaccataatcttagatgttcaagccgtggtatgtt |
364 |
Q |
| |
|
||||||||||||| |||||| | |||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
54780906 |
ttcctgcttgcactattgctgcaaagaggcacatagattcaagcaccacaatcttagatgttcaaggagtggtatgtt |
54780829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University