View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7777_low_15 (Length: 449)

Name: NF7777_low_15
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7777_low_15
NF7777_low_15
[»] chr4 (1 HSPs)
chr4 (1-438)||(44000066-44000503)
[»] chr2 (2 HSPs)
chr2 (21-313)||(8357531-8357822)
chr2 (328-360)||(30544415-30544447)
[»] chr3 (4 HSPs)
chr3 (21-313)||(39293904-39294195)
chr3 (357-438)||(5572590-5572672)
chr3 (113-207)||(35212717-35212811)
chr3 (318-358)||(44301685-44301724)
[»] chr8 (1 HSPs)
chr8 (182-242)||(26894377-26894437)
[»] chr7 (1 HSPs)
chr7 (318-359)||(34947630-34947670)
[»] chr5 (1 HSPs)
chr5 (329-358)||(32440274-32440303)
[»] chr1 (1 HSPs)
chr1 (328-361)||(49223939-49223972)
[»] chr6 (1 HSPs)
chr6 (318-358)||(17829062-17829101)


Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 44000066 - 44000503
Alignment:
Q  1 tctttcctgaaggagttattaataagtaatcatcaacgtaaattgaaaactaatagaagttcatgcaagaaaggacactctgcaggaaatgcttacataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000066 tctttcctgaaggagttattaataagtaatcatcaacgtaaattgaaaactaatagaagttcatgcaagaaaggacactctgcaggaaatgcttacataa 44000165  T
Q  101 gcactcattttaggccaaggtccattatcaaaggcctcacgagctgctgatactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000166 gcactcattttaggccaaggtccattatcaaaggcctcacgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatca 44000265  T
Q  201 cttcccctgtgcgtggatcaagtgttggaaatgttttccctggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctcacttccactca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000266 cttcccctgtgcgtggatcaagtgttggaaatgttttccctggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctcacttccactca 44000365  T
Q  301 ataaatgatttttcgagacaaaccttaaaacgactattattttgagacggagggagtaacaagcaacgatctttaaacattacctgatgcagcatccaca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000366 ataaatgatttttcgagacaaaccttaaaacgactattattttgagacggagggagtaacaagcaacgatctttaaacattacctgatgcagcatccaca 44000465  T
Q  401 aactttccatttataagatgctgtgtataatttattga 438  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44000466 aactttccatttataagatgctgtgtataatttattga 44000503  T

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Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 21 - 313
Target Start/End: Original strand, 8357531 - 8357822
Alignment:
Q  21 aataagtaatcatcaacgtaaattgaaaactaatagaagttcatgcaagaaaggacactctgcaggaaatgcttacataagcactcattttaggccaagg 120  Q
    ||||||| ||||||||||||| || |||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  8357531 aataagtcatcatcaacgtaattttaaaactaatataagttcatgtaagaaaggacactctgaaggaaatgcttacataagcattcattttaggccaagg 8357630  T
Q  121 tccattatcaaaggcctcacgagctgctgatactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatcacttcccctgtgcgtggatca 220  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8357631 tccattatgaaaggcctcacgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtggatca 8357730  T
Q  221 agtgttggaaatgttttccctggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctcacttccactcaataaatgattttt 313  Q
    |||||||||||||||||||||| |||||||| ||||||| |||||||||||||||| ||| ||||||||||||||| |||||| |||||||||    
T  8357731 agtgttggaaatgttttccctgaaatcaaaa-aaactccatgtttaatctaagagcgtaatttgttctcacttccattcaatacatgattttt 8357822  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 360
Target Start/End: Original strand, 30544415 - 30544447
Alignment:
Q  328 aaacgactattattttgagacggagggagtaac 360  Q
    ||||||||||||||| |||||||||||||||||    
T  30544415 aaacgactattatttagagacggagggagtaac 30544447  T

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Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 313
Target Start/End: Complemental strand, 39294195 - 39293904
Alignment:
Q  21 aataagtaatcatcaacgtaaattgaaaactaatagaagttcatgcaagaaaggacactctgcaggaaatgcttacataagcactcattttaggccaagg 120  Q
    ||||||| ||||||||||||| || |||||| ||| ||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| |||||    
T  39294195 aataagtcatcatcaacgtaattttaaaactcatataagttcatgtaagaaaggacacgctgaaggaaatgcttacataagcactcattttaggtcaagg 39294096  T
Q  121 tccattatcaaaggcctcacgagctgctgatactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatcacttcccctgtgcgtggatca 220  Q
    |||||||| ||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39294095 tccattatgaaaggcctcgcaagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtggatca 39293996  T
Q  221 agtgttggaaatgttttccctggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctcacttccactcaataaatgattttt 313  Q
    |||||||||||||||||||||| ||||||||| |||||| |||||||||||||||| ||||||||||||||||||| | |||| |||||||||    
T  39293995 agtgttggaaatgttttccctgaaatcaaaag-aactccatgtttaatctaagagcgtaacttgttctcacttccatttaatacatgattttt 39293904  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 357 - 438
Target Start/End: Complemental strand, 5572672 - 5572590
Alignment:
Q  357 taacaagcaa-cgatctttaaacattacctgatgcagcatccacaaactttccatttataagatgctgtgtataatttattga 438  Q
    |||||||||| | ||||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||||||| || |||||    
T  5572672 taacaagcaaacaatctttatacattacctgatgcatcatccacaaattttccatttataagatgttgtgtatagttcattga 5572590  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 35212717 - 35212811
Alignment:
Q  113 ggccaaggtccattatcaaaggcctcacgagctgctgatactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatcacttcccc 207  Q
    ||||| ||||| | |||||| ||||  | |||||| ||||||||||| || ||||||||   |||||||||||||||||||||||||||||||||    
T  35212717 ggccatggtccttcatcaaaagcctttctagctgcagatactgcacgattgatatcttcttgatcaccttcagcaacatgagcaatcacttcccc 35212811  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 44301685 - 44301724
Alignment:
Q  318 acaaaccttaaaacgactattattttgagacggagggagta 358  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  44301685 acaaaccttaaa-cgaccattattttgagacggagggagta 44301724  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 26894437 - 26894377
Alignment:
Q  182 tcagcaacatgagcaatcacttcccctgtgcgtggatcaagtgttggaaatgttttccctg 242  Q
    ||||||||||||||||||||||||||||| | |||||| | ||||||||||||||| ||||    
T  26894437 tcagcaacatgagcaatcacttcccctgtccttggatccaatgttggaaatgttttacctg 26894377  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 359
Target Start/End: Original strand, 34947630 - 34947670
Alignment:
Q  318 acaaaccttaaaacgactattattttgagacggagggagtaa 359  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  34947630 acaaaccttaaa-cgactattatttagagacggagggagtaa 34947670  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 358
Target Start/End: Original strand, 32440274 - 32440303
Alignment:
Q  329 aacgactattattttgagacggagggagta 358  Q
    ||||||||||||||||||||||||||||||    
T  32440274 aacgactattattttgagacggagggagta 32440303  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 361
Target Start/End: Complemental strand, 49223972 - 49223939
Alignment:
Q  328 aaacgactattattttgagacggagggagtaaca 361  Q
    ||||||||||||||| ||||||||||||||||||    
T  49223972 aaacgactattatttagagacggagggagtaaca 49223939  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 17829062 - 17829101
Alignment:
Q  318 acaaaccttaaaacgactattattttgagacggagggagta 358  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  17829062 acaaaccttaaaa-gactattattttgagacggagagagta 17829101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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