View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_low_16 (Length: 441)
Name: NF7777_low_16
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 7 - 422
Target Start/End: Original strand, 8764664 - 8765079
Alignment:
| Q |
7 |
gaagaatatacacatgcagttggtccaaagtgccgtagcccacaagaaaaagctgcttgggcagattgtcttgaactctatgatttcactgttcaaaagc |
106 |
Q |
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| T |
8764664 |
gaagaaaatacacatgcagttggtccaaagtgccgtagcccacaagaaaaagctgcttgggcagattgtcttgaactctatgatttcacagtccaaaagc |
8764763 |
T |
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| Q |
107 |
ttagccaaacaaaatacacaaagtgtacacaatatgaatcccaaacatggcttagtacagctttaacaaatcttgaaacatgtaaaaatggtttttatga |
206 |
Q |
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| T |
8764764 |
ttagccaaacaaaatacacaaagtgtacacaatatgaatcccaaacatggcttagtacagctttaacaaatcttgaaacatgtaaaaatggtttttatga |
8764863 |
T |
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| Q |
207 |
ccttggtgtcacaaactatgtcttacctttgttgtctaataatgtaacaaaattgttaagtaataccttgtctcttaacaaggttccttaccaacaacca |
306 |
Q |
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| T |
8764864 |
ccttggtgtcacaaactatgtcttacctttgttgtctaataatgtaacaaagttgttaagtaacaccttgtctcttaacaaggttccttaccaacaacca |
8764963 |
T |
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| Q |
307 |
agttacaaagatgggtttccaacatgggttaaacctggtgataggaagcttcttcaaacttcttccgcggcttcgaaggctaatgtcgtcgtggctaaag |
406 |
Q |
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| T |
8764964 |
agttacaaagatgggtttccaacatgggttaaacctggtgataggaaacttcttcaaacttcttccgcggcttcgaaggctaatgtcgtcgttgctaaag |
8765063 |
T |
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| Q |
407 |
atggttcgggtaagta |
422 |
Q |
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| T |
8765064 |
atggttcgggtaagta |
8765079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 356
Target Start/End: Original strand, 8743090 - 8743199
Alignment:
| Q |
247 |
aatgtaacaaaattgttaagtaataccttgtctcttaacaaggttccttaccaacaaccaagttacaaagatgggtttccaacatgggttaaacctggtg |
346 |
Q |
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| T |
8743090 |
aatgttactaaattgctaagtaacactttggctcttaacaaagttcaatatcaagaacctagctacaaagatgggttcccaacatgggttaggccaggtg |
8743189 |
T |
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| Q |
347 |
ataggaagct |
356 |
Q |
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|||| ||||| |
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| T |
8743190 |
atagaaagct |
8743199 |
T |
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