View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_low_18 (Length: 424)
Name: NF7777_low_18
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 158 - 410
Target Start/End: Original strand, 28519227 - 28519468
Alignment:
| Q |
158 |
tttcaattttacagacaagagtattaagtgtagctttcaataaactccctaactaaagtaaaagtcaacaaatcttacaacttagtccacaaaaataaaa |
257 |
Q |
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| T |
28519227 |
tttcaattttacagacaagagtattaagtgtagctttcaataaactccctaactaaagtaaaagtcaacaaatcttacaacttagtccacaaaaataaaa |
28519326 |
T |
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| Q |
258 |
caaatcttgctccaataaaatatacnnnnnnngtcccaaattataagttatttggacaattttgttcaaattaaaaaatgtggttagaaaatgtagnnnn |
357 |
Q |
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| T |
28519327 |
caaatcttgctccaataaaatatactttttttgtcccaaattataagttatttggacaattttgttcaaattaaaaaatgtagtt-----------tttt |
28519415 |
T |
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| Q |
358 |
nnnncctaagaaagttagaaaatgtagttaattttgtacggagaagagaaatt |
410 |
Q |
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| T |
28519416 |
ttttcctaagaaagttagaaaatgtagttaattttgtacggagaaaagaaatt |
28519468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 28519085 - 28519186
Alignment:
| Q |
13 |
gttgtcatccttcaccaaattggccatggcagaaagcctaaaatccgccatggccgatatttgagaacaccactaatataatatctataaaatcttatgg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28519085 |
gttgtcatccttcaccaaattggccatggcagaaagcctaaaatccgccatggccgatatttgagaacaccactaatataatatctataaaatcttatgg |
28519184 |
T |
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| Q |
113 |
aa |
114 |
Q |
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| T |
28519185 |
aa |
28519186 |
T |
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