View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_low_19 (Length: 423)
Name: NF7777_low_19
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 24 - 407
Target Start/End: Original strand, 45240502 - 45240885
Alignment:
| Q |
24 |
taggggacaaaatcgcaacgctttgaaacatatgggagaaaattgcatttacgccttctttttactgtgatagcatcaacacaaattctatgaaagttac |
123 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45240502 |
taggggacaaaatcgcaacgttttgaaacatatgggagaaaattgcatttacgccttctttttactgtgatagcatcaacacaaattctatgaaagttac |
45240601 |
T |
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| Q |
124 |
cacatatggtgttgttcctttccatcacatatatgcacaaactagcaggtgcttcatatacaaactacaaaaagcctagcctcggatgacagcaaaaatg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45240602 |
cacatatggtgttgttcctttccatcacatatatgcacaaactagcaggtgcttcatatacaaactacaaaaagcctagcctcggatgacagcaaaaatg |
45240701 |
T |
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| Q |
224 |
ataannnnnnngccaatgattcacatccctataactccccattcagcaacactcatttcttttttatgtacaccagtctacctttggtgaaagcaatcta |
323 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45240702 |
ataatttttttgccaatgattcacatccctataactccccattcagcaacactcatttcttttttatgtacaccagcctacctttggtgaaagcaatcta |
45240801 |
T |
|
| Q |
324 |
agaataagaacctaatgcactagccaccatactattattatagagtgcaacgctgaattcttatcaaattgttgataggattta |
407 |
Q |
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| T |
45240802 |
agaataagaacctaatgcactagccaccatactattattatagagtgcaacgctgaattcttatcaaattgttgataggattta |
45240885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 45217984 - 45218067
Alignment:
| Q |
264 |
attcagcaacactcatttcttttttatgtacaccagtctacctttggtgaaagcaatctaagaataagaacctaatgcactagc |
347 |
Q |
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| T |
45217984 |
attcagcaacactcatttcttttttatgtacaccagcctacctttggtgaaagcaatctaagaataagaacctaatgtactagc |
45218067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 45217864 - 45217968
Alignment:
| Q |
126 |
catatggtgttgttcctttccatcacatatatgcacaaacta---gcaggtgcttcatatacaaactacaaaaagcctagcctcggatgacagcaaaaat |
222 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
45217864 |
catatggtgttgttcctttccataacatatatgcacaaactactagcacgtgcttcatattcaaactacaacaagcctagcctcggatgacagcaaaaat |
45217963 |
T |
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| Q |
223 |
gataa |
227 |
Q |
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||||| |
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| T |
45217964 |
gataa |
45217968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 45217795 - 45217862
Alignment:
| Q |
31 |
caaaatcgcaacgctttgaaacatatgggagaaaattgcatttacgccttctttttactgtgatagca |
98 |
Q |
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| T |
45217795 |
caaaatcgcaacgttttgaaacataggggagaaaggtacatttaagccttctttttactgtgatagca |
45217862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 45218336 - 45218387
Alignment:
| Q |
356 |
tattattat-agagtgcaacgctgaattcttatcaaattgttgataggattt |
406 |
Q |
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| T |
45218336 |
tattattattagagtgcaacactgaattcttatcaaattgttgataggattt |
45218387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 303 - 406
Target Start/End: Original strand, 9289666 - 9289769
Alignment:
| Q |
303 |
acctttggtgaaagcaatctaagaataagaacctaatgcactagccaccatactattatta-tagagtgcaacgctgaattcttatcaaattgttgatag |
401 |
Q |
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||||||||||| ||||||||||||||| ||||| ||||||||||| ||| || || ||||| ||||||||||| || | | ||||||||||||||||||| |
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| T |
9289666 |
acctttggtgatagcaatctaagaatatgaacccaatgcactagctacc-tagtactattattagagtgcaacactaactccttatcaaattgttgatag |
9289764 |
T |
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| Q |
402 |
gattt |
406 |
Q |
| |
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||||| |
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| T |
9289765 |
gattt |
9289769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 9063747 - 9063653
Alignment:
| Q |
136 |
tgttcctttccatcacatatatgcacaaac---tagcaggtgcttcatatacaaactacaaaaagcctagcctcggatgacagcaaaaatgataa |
227 |
Q |
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||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| | ||| || ||| ||||||| ||||||||||| |
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| T |
9063747 |
tgttcctttgcatcacatatatgcacaaaccactagcacctgcttcatatacaaactacaacacgcccagtctcagatgacattaaaaatgataa |
9063653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 290
Target Start/End: Original strand, 9314024 - 9314139
Alignment:
| Q |
175 |
cttcatatacaaactacaaaaagcctagcctcggatgacagcaaaaatgataannnnnnngccaatgattcacatccctataactccccattcagcaaca |
274 |
Q |
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||||||||||||||||||| | |||||||||||||||||| ||||||||||| ||| | | |||||||| | ||| |||||||||| |||| |
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| T |
9314024 |
cttcatatacaaactacaacacgcctagcctcggatgacataaaaaatgataagttctttaccacttactcacatccttccaacaccccattcagtaaca |
9314123 |
T |
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| Q |
275 |
ctcatttcttttttat |
290 |
Q |
| |
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||| |||||||||||| |
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| T |
9314124 |
ctcgtttcttttttat |
9314139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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