View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_low_2 (Length: 916)
Name: NF7777_low_2
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 234 - 907
Target Start/End: Original strand, 2342285 - 2342950
Alignment:
| Q |
234 |
tttcttccagcacaaaagtatcagtttatctatatcaattacaatggagnnnnnnnttgtatttatcctatcatactttcatattcaatgtctcaaatca |
333 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2342285 |
tttcttccagcacaaaagtatcaatttatctatatcaattacaaaggagaaaaaaattgtatttatccaatcatactttcatattcaatgtctcaaatca |
2342384 |
T |
|
| Q |
334 |
cttctctctcttgagtaaaattttaggtaaaacaataatagttaatgacacgtagggagttgaataactcaactgatttaagctaagggaagaatttgag |
433 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2342385 |
cttctctctcttgagtaaaattttaggtaaaacaataatagttaatgacacgtagggagttgaataactcaactgatttaagctaagggaagaatttgag |
2342484 |
T |
|
| Q |
434 |
ctcttgtattcaaatcaagatgatagattaaaatattaatctaacaaagtaactttaacattttaacatttttcattnnnnnnnnnnnngttaatgatac |
533 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| |
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| T |
2342485 |
ctcttgtattcaaatcaagatgatagattaaaatattaatctaacaaactaactttaacatttt--------tcattaaaaacaaaaaagttaatgatac |
2342576 |
T |
|
| Q |
534 |
attgaactttcaaaatatcaaatagatagaaacacaannnnnnnataaaagcacatttaaattagaaaagagagagtataaggtaactaatatttcttta |
633 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2342577 |
attgaactttgaaaatatcaaatagatagaaacacaatttttttataaaagcacatttaaattagaaaagagagagtataaggtaactaatatttcttta |
2342676 |
T |
|
| Q |
634 |
cctctccttgtagtttctgattatgaactttaagtgcatcattttcatccttgacagcttcaaatttcttcttgaggacttcatattcattctcaagttg |
733 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2342677 |
cctctccttgtagtttctgattatgaactttaagtgcatcattttcatccttgacagcttcaaatttcttcttgaggacttcatattcattctcaagttg |
2342776 |
T |
|
| Q |
734 |
ctttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaaccctaaagccttagcaagttgcacttttctttctggatca |
833 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2342777 |
ctttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaaccctaaagccttagcaagttgcacttttctttctggatca |
2342876 |
T |
|
| Q |
834 |
agcttgttcccaaattcaaagctcttctcaagggcctgcacttgatccaaattcagcctgatcttcttcttctc |
907 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2342877 |
agcttgttcccaaattcaaagctcttctcaagggcctgcacttgatccaaattcagtctgatcttcttcttctc |
2342950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 2342065 - 2342221
Alignment:
| Q |
14 |
caaaaagaaaaacattaatttgaagctatgggatctgagtctgacaatgatactgactcttaacaagaatggccaacaattaatcaagcagagaaagtta |
113 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2342065 |
caaaaagaaaaacattaatttgaagctatgggatctgagtctgacaatgatactgactcttaacaagaatggccaacaattaatcaagcagagaaagtta |
2342164 |
T |
|
| Q |
114 |
atatgtggatattggtcactttataaagtcaatagtacctatagaatcataatgcat |
170 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2342165 |
atatgtggatattggtcactttataatgtcaatagtacctatagaatcataatgcat |
2342221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 693 - 865
Target Start/End: Original strand, 3353646 - 3353818
Alignment:
| Q |
693 |
tcaaatttcttcttgaggacttcatattcattctcaagttgctttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgca |
792 |
Q |
| |
|
||||||| ||||| || ||||||||||| |||||||||||||| ||||| || |||||||||||||| || ||||||||||| | ||||||||| || | |
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| T |
3353646 |
tcaaattgtttcttaagaacttcatattctttctcaagttgcttagttttccaccttgctcttctattttggaaccatatagctacttgtctaggttgta |
3353745 |
T |
|
| Q |
793 |
accctaaagccttagcaagttgcacttttctttctggatcaagcttgttcccaaattcaaagctcttctcaag |
865 |
Q |
| |
|
|||| ||||| ||||| | ||||| ||| || || || ||||||||||| |||| ||||| ||||||||||| |
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|
| T |
3353746 |
accccaaagctttagccaattgcattttcctctcaggttcaagcttgtttccaatctcaaaactcttctcaag |
3353818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 732 - 903
Target Start/End: Original strand, 17181898 - 17182069
Alignment:
| Q |
732 |
tgctttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaaccctaaagccttagcaagttgcacttttctttctggat |
831 |
Q |
| |
|
|||||||| || |||||||| |||||||| |||||||||||||||| ||||||||| ||||| | ||| | ||||| |||| ||| || || || | |
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| T |
17181898 |
tgctttgtcttccatcttgcccttctattttgaaaccatatagcaacttgtctaggttgcaagttaagagctcttgcaagctgcattttcctctcaggct |
17181997 |
T |
|
| Q |
832 |
caagcttgttcccaaattcaaagctcttctcaagggcctgcacttgatccaaattcagcctgatcttcttct |
903 |
Q |
| |
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||||||| || |||| |||||| ||||||||||| | || |||||| |||| ||| ||||| ||||||||| |
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| T |
17181998 |
caagcttattaccaagttcaaaactcttctcaagtgtcttcacttgttccatattaagcctcctcttcttct |
17182069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 735 - 793
Target Start/End: Original strand, 42087487 - 42087545
Alignment:
| Q |
735 |
tttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaa |
793 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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|
| T |
42087487 |
tttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaa |
42087545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 726 - 793
Target Start/End: Complemental strand, 9379127 - 9379060
Alignment:
| Q |
726 |
tcaagttgctttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaa |
793 |
Q |
| |
|
||||||||||||| ||| ||||| |||||| | || |||||||||||||||| |||||| |||||||| |
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| T |
9379127 |
tcaagttgctttgatttccatctagctcttttgttttgaaaccatatagcaacttgtcttggctgcaa |
9379060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 753 - 903
Target Start/End: Original strand, 24692391 - 24692541
Alignment:
| Q |
753 |
cttctattctgaaaccatatagcaatttgtctaggctgcaaccctaaagccttagcaagttgcacttttctttctggatcaagcttgttcccaaattcaa |
852 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||||||| || | ||| | || || |||| ||| || || || ||||||||||| || || |||| |
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| T |
24692391 |
cttctgttttgaaaccatatagcaatttgtcttggctgcaatccaagagctcttgctagctgcattttcctctcaggttcaagcttgtttcctaactcaa |
24692490 |
T |
|
| Q |
853 |
agctcttctcaagggcctgcacttgatccaaattcagcctgatcttcttct |
903 |
Q |
| |
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| ||||||||||| | || |||||| |||| || ||||| ||||||||| |
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|
| T |
24692491 |
aactcttctcaagtgtcttcacttgttccatgttaagccttctcttcttct |
24692541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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