View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7777_low_25 (Length: 325)

Name: NF7777_low_25
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7777_low_25
NF7777_low_25
[»] chr4 (19 HSPs)
chr4 (115-309)||(9138407-9138601)
chr4 (129-308)||(8416784-8416963)
chr4 (129-308)||(8041237-8041416)
chr4 (115-308)||(8035809-8036002)
chr4 (126-308)||(8411182-8411364)
chr4 (24-117)||(9138259-9138352)
chr4 (129-309)||(8358987-8359167)
chr4 (129-279)||(8404163-8404316)
chr4 (32-117)||(8041083-8041168)
chr4 (31-117)||(8417041-8417127)
chr4 (18-117)||(8035655-8035754)
chr4 (31-93)||(8411460-8411522)
chr4 (18-93)||(43144126-43144201)
chr4 (36-97)||(8358834-8358895)
chr4 (133-309)||(9576835-9577011)
chr4 (65-117)||(8418866-8418918)
chr4 (36-88)||(9576708-9576762)
chr4 (132-306)||(43144300-43144474)
chr4 (28-89)||(8404434-8404495)
[»] chr2 (3 HSPs)
chr2 (115-308)||(33084334-33084527)
chr2 (18-117)||(33084582-33084681)
chr2 (36-86)||(24845660-24845710)
[»] chr7 (2 HSPs)
chr7 (189-279)||(5476711-5476801)
chr7 (18-92)||(5476994-5477068)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 115 - 309
Target Start/End: Original strand, 9138407 - 9138601
Alignment:
Q  115 ataggacaatcatcgatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  9138407 ataggacaatcatcgatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacttttcttatagtcaaattggatagtgtctgat 9138506  T
Q  215 tagatatgcagaggacttgggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcacag 309  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9138507 tagatatgcagaggacttgtgcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgtgacagtttggaaaggggtcagcacag 9138601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 129 - 308
Target Start/End: Complemental strand, 8416963 - 8416784
Alignment:
Q  129 gatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgattagatatgcagagg 228  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||    ||||||||||||||| | ||||||||||||||||||||||    
T  8416963 gatagtaaaagaactaagatttggagtagaaagcgaaaattggtcagctgatacgtaggatatagtcaaattggataatgtctgattagatatgcagagg 8416864  T
Q  229 acttgggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcaca 308  Q
    ||||| ||||||||||||||||||||| || ||| |||||||||||||| |||  ||||||||| |||||| ||||||||    
T  8416863 acttgtgcatcctcaatcaaagaacaaccactgataaccaaagtattcagcacatgacagtttgaaaagggctcagcaca 8416784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 129 - 308
Target Start/End: Original strand, 8041237 - 8041416
Alignment:
Q  129 gatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgattagatatgcagagg 228  Q
    |||||||||||||||||||||||||| |||||| ||| ||||| |||||||||| |   |||||||||||||||| | ||||||||||||||||||||||    
T  8041237 gatagtaaaagaactaagatttggagtagaaagcgaaaattggacagctgatacataggttatagtcaaattggataatgtctgattagatatgcagagg 8041336  T
Q  229 acttgggcatcctcaatcaaagaacaagcaat-gagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcaca 308  Q
    ||||| ||||||||||||||||||| ||| || |||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  8041337 acttgtgcatcctcaatcaaagaac-agctatcgagaaccaaaatattcaacacgtgacagtttggaaaagggtcagcaca 8041416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 115 - 308
Target Start/End: Original strand, 8035809 - 8036002
Alignment:
Q  115 ataggacaatcatcgatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgat 214  Q
    ||||||||||   |||||||||||||||||||  |||||| |||||| |||||||| ||||||  |||   |  ||||||||||||||| ||||||||||    
T  8035809 ataggacaatgcccgatagtaaaagaactaagccttggagtagaaagcgaatattgttcagctagtacagatgatatagtcaaattggatagtgtctgat 8035908  T
Q  215 tagatatgcagaggacttgggcatcctcaatcaaagaacaagcaat-gagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcaca 308  Q
    ||||||||||||||||||| ||||||||||||||||||| ||| || |||||||||| ||||||||||  |||||||| ||||||||||||||||    
T  8035909 tagatatgcagaggacttgtgcatcctcaatcaaagaac-agctatcgagaaccaaaatattcaacacatgacagttttgaaaggggtcagcaca 8036002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 126 - 308
Target Start/End: Complemental strand, 8411364 - 8411182
Alignment:
Q  126 atcgatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgattagatatgcag 225  Q
    ||||||||||||||||||||||| ||||| |||||| ||| ||||||||||| |||| || |||||||||||| |||| | |||||||||||||||||||    
T  8411364 atcgatagtaaaagaactaagatatggagtagaaagcgaaaattggtcagctaatacattacttatagtcaaactggataatgtctgattagatatgcag 8411265  T
Q  226 aggacttgggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcaca 308  Q
    |||||||| ||||| |||||||||||||||    |||| |||||||| |||| |||  |||| |||||||| |||||||||||    
T  8411264 aggacttgtgcatcttcaatcaaagaacaatacctgagcaccaaagtcttcagcacatgacattttggaaaagggtcagcaca 8411182  T

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Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 9138259 - 9138352
Alignment:
Q  24 agcataaccaaatttcaaaatcttgacattggaaatcacttgcagccatcttaagaagattgaagcttccccgttattggaaaagccatacata 117  Q
    |||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9138259 agcataaccaaattccaaaatcttgacattggcaagcacttgcagccatcttaagaagattgaagcttccccgttattggaaaagccatacata 9138352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 129 - 309
Target Start/End: Original strand, 8358987 - 8359167
Alignment:
Q  129 gatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgattagatatgcagagg 228  Q
    |||||||||| ||||||||||||||| |||||| ||| ||||||||||| ||||||    ||||||||||||||| | ||||||||||||||||||||||    
T  8358987 gatagtaaaaaaactaagatttggagtagaaagcgaaaattggtcagctaatacgtaggatatagtcaaattggataatgtctgattagatatgcagagg 8359086  T
Q  229 acttgggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcacag 309  Q
    | ||| ||||| |||||||||||||||    ||||   |||||| ||||||||  ||||||||| ||||||||||||||||    
T  8359087 atttgtgcatcatcaatcaaagaacaatacttgagctgcaaagtgttcaacacatgacagtttgaaaaggggtcagcacag 8359167  T

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Target: chr4; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 129 - 279
Target Start/End: Complemental strand, 8404316 - 8404163
Alignment:
Q  129 gatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgat---acgtttcttatagtcaaattggacagtgtctgattagatatgcag 225  Q
    |||||||||||||||||||||||||| |||||| ||| |||  |||||||||   | ||    |||||||||| ||||||||||||||||||||||||||    
T  8404316 gatagtaaaagaactaagatttggagtagaaagcgaaaattcatcagctgatgatatgtgaaatatagtcaaactggacagtgtctgattagatatgcag 8404217  T
Q  226 aggacttgggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaac 279  Q
    |||||||| |||||||||||||||  ||||    |||| |||||||||||||||    
T  8404216 aggacttgtgcatcctcaatcaaatcacaaaacctgagcaccaaagtattcaac 8404163  T

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Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 8041083 - 8041168
Alignment:
Q  32 caaatttcaaaatcttgacattggaaatcacttgcagccatcttaagaagattgaagcttccccgttattggaaaagccatacata 117  Q
    ||||| |||||||||| |||||||  | |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  8041083 caaatctcaaaatctttacattggccagcacttgcagccatcttaagaagattgaagcttccacgttattggaaatgccatacata 8041168  T

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Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 8417127 - 8417041
Alignment:
Q  31 ccaaatttcaaaatcttgacattggaaatcacttgcagccatcttaagaagattgaagcttccccgttattggaaaagccatacata 117  Q
    |||| |||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||| || || || |||||| ||||    
T  8417127 ccaactttcaaaatctttacattggcaaacacttgcagccatcttaagaagattgaagcttccccgatagtgaaatagccatccata 8417041  T

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Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 8035655 - 8035754
Alignment:
Q  18 aatgatagcataaccaaatttcaaaatcttgacattggaaatcacttgcagccatcttaagaagattgaagcttccccgttattggaaaagccatacata 117  Q
    ||||| || ||| ||||||||||||||||| ||||||| || ||||||||||||  ||||||||||  |||||||| | |||||||||||| ||||||||    
T  8035655 aatgacagaatagccaaatttcaaaatctttacattggcaagcacttgcagccaatttaagaagatcaaagcttccgcattattggaaaagtcatacata 8035754  T

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Target: chr4; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 8411522 - 8411460
Alignment:
Q  31 ccaaatttcaaaatcttgacattggaaatcacttgcagccatcttaagaagattgaagcttcc 93  Q
    ||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||||||||||    
T  8411522 ccaaatttcaaaatctttacattggcaagcacttgcagccatcttacgaagattgaagcttcc 8411460  T

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Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 43144126 - 43144201
Alignment:
Q  18 aatgatagcataaccaaatttcaaaatcttgacattggaaatcacttgcagccatcttaagaagattgaagcttcc 93  Q
    ||||| || |||||||| |||||||||||| || |||| || |||||||||||||||||||||| |||||||||||    
T  43144126 aatgagagaataaccaattttcaaaatctttacgttggcaagcacttgcagccatcttaagaaggttgaagcttcc 43144201  T

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Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 8358834 - 8358895
Alignment:
Q  36 tttcaaaatcttgacattggaaatcacttgcagccatcttaagaagattgaagcttccccgt 97  Q
    ||||||||||| |||||||| || ||||||||||||| |||||||||||||||||| |||||    
T  8358834 tttcaaaatctcgacattggcaagcacttgcagccattttaagaagattgaagctttcccgt 8358895  T

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Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 309
Target Start/End: Original strand, 9576835 - 9577011
Alignment:
Q  133 gtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgattagatatgcagaggactt 232  Q
    |||||| ||||||||||||||| |||||||||  || ||  || ||||| |    ||| ||||||||  || ||||| | ||||||||||||||||||||    
T  9576835 gtaaaataactaagatttggagtagaaagtgataatcggcaagatgatatgcaagttaaagtcaaatgtgaaagtgtataattagatatgcagaggactt 9576934  T
Q  233 gggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcacag 309  Q
    | |  |||| ||||||| |||||  |  ||| ||||| |||||||||||| ||||||| | |||||| |||||||||    
T  9576935 gtgtttccttaatcaaacaacaataaccgagcaccaatgtattcaacacgagacagttcgaaaagggatcagcacag 9577011  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 8418918 - 8418866
Alignment:
Q  65 gcagccatcttaagaagattgaagcttccccgttattggaaaagccatacata 117  Q
    |||||||| ||| |||||||||||||||||| ||||||| | |||||||||||    
T  8418918 gcagccattttacgaagattgaagcttcccctttattgggacagccatacata 8418866  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 9576708 - 9576762
Alignment:
Q  36 tttcaaaatcttgacattggaaatcacttgcagcc--atcttaagaagattgaag 88  Q
    |||||||||||||||||||| || |||||||||||  ||| ||||||||||||||    
T  9576708 tttcaaaatcttgacattggcaagcacttgcagccatatcctaagaagattgaag 9576762  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 306
Target Start/End: Original strand, 43144300 - 43144474
Alignment:
Q  132 agtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgattagatatgcagaggact 231  Q
    |||||||||  |||||||||||| |||||||||| |||| | |||||  ||      |||||| ||| |||| ||||  | |||||||||||| ||||||    
T  43144300 agtaaaagacttaagatttggagtagaaagtgaaaattgctgagctgcaacagaagatatagttaaactggaaagtgcattattagatatgcaaaggact 43144399  T
Q  232 tgggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgcgacagtttggaaaggggtcagca 306  Q
    |  ||||||| ||||||||||||| |  | || |||||| |||| ||| |  ||||||||| ||| |||||||||    
T  43144400 tttgcatcctgaatcaaagaacaatccctaagtaccaaattatttaactcatgacagtttgaaaaagggtcagca 43144474  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 8404495 - 8404434
Alignment:
Q  28 taaccaaatttcaaaatcttgacattggaaatcacttgcagccatcttaagaagattgaagc 89  Q
    ||||||| |||||||||||| || |||| || |||||| ||||| |||||||||| ||||||    
T  8404495 taaccaattttcaaaatctttacgttggcaagcacttgaagccaacttaagaagactgaagc 8404434  T

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Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 115 - 308
Target Start/End: Complemental strand, 33084527 - 33084334
Alignment:
Q  115 ataggacaatcatcgatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgat 214  Q
    |||||||||||   |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||  | ||||||||||||||| ||||||||||    
T  33084527 ataggacaatccctgatagtaaaagaactaagatttggagtagaaagtgaatattggtcagttgatatgtaacatatagtcaaattggatagtgtctgat 33084428  T
Q  215 tagatatgcagaggacttgggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcaca 308  Q
    |||| ||| |||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33084427 tagacatgtagaggacttgtgcatcctcaatcaaagaacaaccactgagaaccaaagtattcaacacgtgacagtttggaaaggggtcagcaca 33084334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 33084681 - 33084582
Alignment:
Q  18 aatgatagcataaccaaatttcaaaatcttgacattggaaatcacttgcagccatcttaagaagattgaagcttccccgttattggaaaagccatacata 117  Q
    |||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||||||||| ||||||    
T  33084681 aatgatagaataaccaaattccaaaatctttacattggaaagcacttgcagccatcttaggaagattgaagcttctccgtcattggaaaagccgtacata 33084582  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 24845710 - 24845660
Alignment:
Q  36 tttcaaaatcttgacattggaaatcacttgcagccatcttaagaagattga 86  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||||||||    
T  24845710 tttcaaaatcttcacattggaaagcacttgcagccattttaagaagattga 24845660  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 5476801 - 5476711
Alignment:
Q  189 tatagtcaaattggacagtgtctgattagatatgcagaggacttgggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaac 279  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||    |||| |||||||||||||||    
T  5476801 tatagtcaaattggacagtgtctgattagatatgcagaggactagtgcatcctcaatcaaataacaacacctgagcaccaaagtattcaac 5476711  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 5477068 - 5476994
Alignment:
Q  18 aatgatagcataaccaaatttcaaaatcttgacattggaaatcacttgcagccatcttaagaagattgaagcttc 92  Q
    ||||||||  ||||||| |||||||||||| || || | || |||||| ||||| |||||||||| |||||||||    
T  5477068 aatgatagagtaaccaattttcaaaatctttacgttcgcaagcacttgaagccaacttaagaagactgaagcttc 5476994  T

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