View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_low_28 (Length: 314)
Name: NF7777_low_28
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 36209732 - 36210027
Alignment:
| Q |
1 |
actgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttgacagaatacaaaatcttagttcatctata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36209732 |
actgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttgacagaatacaaaatcttagttcatctata |
36209831 |
T |
|
| Q |
101 |
actgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttcagattttcatcatctctgctacaaacgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36209832 |
actgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttcagattttcatcatctctgctacaaacgc |
36209931 |
T |
|
| Q |
201 |
tcttgttggaagagaatcatgccatgtctcttatcaatttatgaaccttcatttgcttggataaaacctccaaacttgtagatgtcagcaatatct |
296 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36209932 |
tcttgttggaagaaaatcatgccatgtctcttatcaatttatgaaccttcatttgcttggataaaacctccaaacttgtagatgtcagcaatatct |
36210027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 36196608 - 36196912
Alignment:
| Q |
1 |
actgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttgacagaatacaaaatcttagttcatctata |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196608 |
actgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatcttagttcatctata |
36196707 |
T |
|
| Q |
101 |
actgcaaa-gcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttcagattttcatcatctctgctacaaacg |
199 |
Q |
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|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
36196708 |
cctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatctctgctacaaacg |
36196807 |
T |
|
| Q |
200 |
ctcttgttggaagagaatcatgccatgtctct--------tatcaatttatgaaccttcatttgcttggataaaacctccaaacttgtagatgtcagcaa |
291 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
36196808 |
ctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaa |
36196907 |
T |
|
| Q |
292 |
tatct |
296 |
Q |
| |
|
||||| |
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|
| T |
36196908 |
tatct |
36196912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 36188291 - 36188594
Alignment:
| Q |
1 |
actgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttgacagaatacaaaatcttagttcatctata |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36188291 |
actgcaagaaa-aagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatcttagttcatctata |
36188389 |
T |
|
| Q |
101 |
actgcaaa-gcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttcagattttcatcatctctgctacaaacg |
199 |
Q |
| |
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|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
36188390 |
cctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatctctgctacaaacg |
36188489 |
T |
|
| Q |
200 |
ctcttgttggaagagaatcatgccatgtctct--------tatcaatttatgaaccttcatttgcttggataaaacctccaaacttgtagatgtcagcaa |
291 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
36188490 |
ctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaa |
36188589 |
T |
|
| Q |
292 |
tatct |
296 |
Q |
| |
|
||||| |
|
|
| T |
36188590 |
tatct |
36188594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 54 - 296
Target Start/End: Original strand, 36207688 - 36207940
Alignment:
| Q |
54 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctataactgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaac |
152 |
Q |
| |
|
||||| ||||||||||| |||||| | |||||||||||||||| || ||| |||| ||| | | |||||||||||||||||||||||||||||| | | |
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|
| T |
36207688 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatatacaacaacaaatcacatgtgaacctctaatctctccaacatggtgttttcgatat |
36207787 |
T |
|
| Q |
153 |
gatgtgcatgtttcgacttcagattttcatcatctctgctacaaacgctcttgttggaagag-aatcatgccatgtctct--------tatcaatttatg |
243 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| |||| || | ||| | || |||||||||| ||||||| ||||||||| ||| ||||||| |
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| T |
36207788 |
gatgtgcatgtttggacttcaaattttcatcaactctacttctaacacactggttggaagagaaatcatgtcatgtctctgataattgtattaatttatc |
36207887 |
T |
|
| Q |
244 |
aaccttcatttgcttggataaaacctccaaacttgtagatgtcagcaatatct |
296 |
Q |
| |
|
||||||||| || ||||||||| ||||| | |||||||||||||||||||||| |
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|
| T |
36207888 |
aaccttcatatgtttggataaagcctccgagcttgtagatgtcagcaatatct |
36207940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 146 - 296
Target Start/End: Original strand, 36202310 - 36202468
Alignment:
| Q |
146 |
tccaaacgatgtgcatgtttcgacttcagattttcatcatctctgctacaaacgctcttgttggaagagaatcatgccatgtctct--------tatcaa |
237 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| || ||||||| |||| ||||||||| |||||| |
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| T |
36202310 |
tccaaactatgttcatgtttcgacttcagattttcatcatctctgcttcaaacgctctagtaagaagagattcatttcatgtctctgacaattgtatcaa |
36202409 |
T |
|
| Q |
238 |
tttatgaaccttcatttgcttggataaaacctccaaacttgtagatgtcagcaatatct |
296 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
36202410 |
tttatgaaccttcatttctttggataaaacctccaaatttgtagatgtcagcaatatct |
36202468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 54 - 296
Target Start/End: Original strand, 36184500 - 36184756
Alignment:
| Q |
54 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctataactgcaaagcacttctcaacctct----aatctctccaacatggtgttttcc |
148 |
Q |
| |
|
||||| ||||||||||| |||||| | ||||||||||||||||||| ||| |||||||||| | ||||||| ||||||||||||||||||| |||| |
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|
| T |
36184500 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaacaaagcacttgtgaacctctctctaatctctccaacatggtgtcttcc |
36184599 |
T |
|
| Q |
149 |
aaacgatgtgcatgtttcgacttcagattttcatcatctctgctacaaacgctcttgttggaag-agaatcatgccatgtctct--------tatcaatt |
239 |
Q |
| |
|
| ||| | ||||||| |||||||||||||||||| ||||||| | ||| |||| |||||||| | ||||||| ||||||||| ||||| || |
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| T |
36184600 |
gtatgatattcatgtttggacttcagattttcatcaactctgcttctaacactctagttggaagaaaaatcatgtcatgtctctgataattgtatcactt |
36184699 |
T |
|
| Q |
240 |
tatgaaccttcatttgcttggataaaacctccaaacttgtagatgtcagcaatatct |
296 |
Q |
| |
|
||| ||||||||| || |||||||| ||||| | ||||| ||||| |||||||||| |
|
|
| T |
36184700 |
tatcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatct |
36184756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 153 - 296
Target Start/End: Original strand, 36213218 - 36213369
Alignment:
| Q |
153 |
gatgtgcatgtttcgacttcagattttcatcatctctgctacaaacgctcttgttggaagagaatcatgccatgtctcttat--------caatttatga |
244 |
Q |
| |
|
||||||||||||| ||||||| ||||| |||| ||||||| ||||| || | ||| ||||||||||||| ||||||||| || |||||||||| |
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|
| T |
36213218 |
gatgtgcatgtttggacttcaaatttttatcaactctgcttcaaacactttagtttgaagagaatcatgtcatgtctctgataattgaatcaatttatga |
36213317 |
T |
|
| Q |
245 |
accttcatttgcttggataaaacctccaaacttgtagatgtcagcaatatct |
296 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||| || ||||||| |
|
|
| T |
36213318 |
gccttcatttgattggataaaacctccacacttgtagatgtgagtaatatct |
36213369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 191
Target Start/End: Original strand, 36214722 - 36214833
Alignment:
| Q |
80 |
caaaatcttagttcatctataactgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttcagatttt |
179 |
Q |
| |
|
|||| ||||| || ||||||| | |||||||||| |||| |||||||||| ||||||| |||||||||||| | |||||||||| ||||||| ||||| |
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|
| T |
36214722 |
caaagtcttaattgatctataccaacaaagcacttgtcaatctctaatctccccaacattgtgttttccaaataaagtgcatgtttggacttcaaatttt |
36214821 |
T |
|
| Q |
180 |
catcatctctgc |
191 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
36214822 |
caccatctctgc |
36214833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 36198878 - 36198960
Alignment:
| Q |
91 |
ttcatctataactgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttca |
173 |
Q |
| |
|
|||||||||| || ||||||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||||| |
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|
| T |
36198878 |
ttcatctatacctaaaaagcacttaccaatctctaatctctccaacattgtgttttccaaaggatgtgcatgtttagacttca |
36198960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 293
Target Start/End: Original strand, 36200857 - 36201080
Alignment:
| Q |
79 |
acaaaatcttagttcatctataactgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttcagattt |
178 |
Q |
| |
|
|||||||||||||||||||| | | || ||||| | |||||| |||||| ||||||||||||| |||||| | ||||||||||||| ||| || ||| |
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|
| T |
36200857 |
acaaaatcttagttcatctacaccaacacagcacctgtcaaccactaatcactccaacatggtgctttccatatgatgtgcatgtttgaactacaagttt |
36200956 |
T |
|
| Q |
179 |
tcatcatctctgctacaaacgctcttgttggaagag-aatcatgccatgtctct--------tatcaatttatgaaccttcatttgcttggataaaacct |
269 |
Q |
| |
|
|| ||| ||||||| ||||| ||| || |||| || |||||| ||||||||| | ||||||||||||| ||||||| | ||||||||||| |
|
|
| T |
36200957 |
tcgtcaactctgcttcaaacagtctagtaggaaaagaaatcatatcatgtctctgataactgtgtcaatttatgaactgtcatttgttcggataaaacct |
36201056 |
T |
|
| Q |
270 |
ccaaacttgtagatgtcagcaata |
293 |
Q |
| |
|
||| |||| ||| ||| ||||||| |
|
|
| T |
36201057 |
ccacacttttaggtgtgagcaata |
36201080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 36198991 - 36199040
Alignment:
| Q |
232 |
tatcaatttatgaaccttcatttgcttggataaaacctccaaacttgtag |
281 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
36198991 |
tatcaagttatgaaccttcatttgtttggataaaatctccaaacttgtag |
36199040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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