View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7777_low_39 (Length: 249)
Name: NF7777_low_39
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_low_39 |
 | |
|
| [»] scaffold0110 (1 HSPs) |
| | |
|
| [»] scaffold0308 (2 HSPs) |
| | |
|
| [»] scaffold0654 (1 HSPs) |
| | |
|
| [»] scaffold0652 (1 HSPs) |
| | |
|
| [»] scaffold0014 (3 HSPs) |
| | |
|
| [»] scaffold0572 (1 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0177 (1 HSPs) |
| | |
|
| [»] scaffold0086 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 23)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 56 - 234
Target Start/End: Original strand, 29949853 - 29950031
Alignment:
| Q |
56 |
ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29949853 |
ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgacaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa |
29949952 |
T |
|
| Q |
156 |
gagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat |
234 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29949953 |
gagaattgtatgatacagtatctggagtcatattactggaatgcatttctttgaagagattcgcagcttcattcaccat |
29950031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 56 - 234
Target Start/End: Original strand, 29953650 - 29953828
Alignment:
| Q |
56 |
ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa |
155 |
Q |
| |
|
|||||||||||||||||| | ||||| | | ||| ||||||||| || | ||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29953650 |
ttgtaagtgatcacattaaccggttgacatctattatgcatctcatctataagatcccaaacatcagagatgctccctgatttgcaaagtccatcaataa |
29953749 |
T |
|
| Q |
156 |
gagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat |
234 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29953750 |
gagaattgtatgatattgtatcaggagtcatatttctggaatgcatatctttgaagagattcgcagcttcattcaccat |
29953828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 234
Target Start/End: Complemental strand, 24934709 - 24934532
Alignment:
| Q |
57 |
tgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataag |
156 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| ||||||||| | | |||||||||| |||||||||||||||| ||||| ||| ||||| ||||| |
|
|
| T |
24934709 |
tgtaagtgatcacatcggcaggttggcctctattatgcatctcatttacaagatcccaagcatcagagattctcccatatttgagaagaccatcgataag |
24934610 |
T |
|
| Q |
157 |
agaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat |
234 |
Q |
| |
|
|||||||||| ||||||||| |||| |||| || ||||||||||||||||||||||||| | ||||||| |||||| |
|
|
| T |
24934609 |
tgaattgtatgttacagtattaggagccatacttttggaatgcatttctttgaagagattaacggcttcatccaccat |
24934532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 56 - 234
Target Start/End: Original strand, 24739151 - 24739329
Alignment:
| Q |
56 |
ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa |
155 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||| ||||||||| | | |||||||||| ||||| |||||||||| |||||| ||| ||||| |||| |
|
|
| T |
24739151 |
ttgtaagtgatcacatcagcaggttggcctctattatgcatctcatttacaagatcccaagcatcaaagattctcccagatttgtgaagaccatcgataa |
24739250 |
T |
|
| Q |
156 |
gagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat |
234 |
Q |
| |
|
| ||| |||||| ||||||||| |||| |||| || |||||||||||||||||| |||||| | ||||||| |||||| |
|
|
| T |
24739251 |
gtgaactgtatgttacagtattaggagccatacttttggaatgcatttctttgaggagattaacggcttcatccaccat |
24739329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 234
Target Start/End: Complemental strand, 24942243 - 24942065
Alignment:
| Q |
56 |
ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa |
155 |
Q |
| |
|
||||| |||||||||| ||||||||||||| ||| ||||||||| || | |||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
24942243 |
ttgtacgtgatcacatcagcaggttggcctctattatgcatctcatctataagatcccaaacatcagagattcttcccgatttgcaaagtccatcaataa |
24942144 |
T |
|
| Q |
156 |
gagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat |
234 |
Q |
| |
|
| ||| ||||| || | ||| |||| ||| ||||| ||||| ||||||||||||||| | ||||||| |||||| |
|
|
| T |
24942143 |
gcgaactgtatactataatatcaggagccatgtttcttatatgcaattctttgaagagattgacggcttcatccaccat |
24942065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 234
Target Start/End: Complemental strand, 30154507 - 30154365
Alignment:
| Q |
92 |
tgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttc |
191 |
Q |
| |
|
|||||||| || | ||||| ||||||||||||||||||||| ||||||||||| || |||||||| |||||||||| || |||||| ||||||| | || |
|
|
| T |
30154507 |
tgcatctcatctataagataccaaacatcagagattctccccgatttgcaaagcccgtcaataagggaattgtatgttatagtattaggagtcaaacttt |
30154408 |
T |
|
| Q |
192 |
tggaatgcatttctttgaagagattcgcagcttcattcaccat |
234 |
Q |
| |
|
|||||||||||||||| |||||| || ||||||||| |||||| |
|
|
| T |
30154407 |
tggaatgcatttctttaaagagaatcacagcttcatccaccat |
30154365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 234
Target Start/End: Complemental strand, 30149549 - 30149392
Alignment:
| Q |
77 |
ggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtat |
176 |
Q |
| |
|
||||| ||| ||||||||||||| || | || ||||||||||||||| | ||||||| |||||||||||||||||||||| |||||||||| |||||| | |
|
|
| T |
30149549 |
ggttgacctctatcatgcatctcatctataaaatcccaaacatcagatactctccctaatttgcaaagtccatcaataagggaattgtatgttacagtgt |
30149450 |
T |
|
| Q |
177 |
ttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat |
234 |
Q |
| |
|
| ||| |||||| | | ||||||||||||||||| ||||| | ||||||| |||||| |
|
|
| T |
30149449 |
taggaatcatatctttcgaatgcatttctttgaaaagatttacggcttcatccaccat |
30149392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 106 - 234
Target Start/End: Complemental strand, 30053420 - 30053292
Alignment:
| Q |
106 |
aagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttct |
205 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||| |||||| |||||||| |||||||| ||| | ||||||||||| |
|
|
| T |
30053420 |
aagatcccaaacatcagagattcttcccgatttgcaaagtccatcaataagtgaactgtatgtaacagtattaggagtcatgttttttaaatgcatttct |
30053321 |
T |
|
| Q |
206 |
ttgaagagattcgcagcttcattcaccat |
234 |
Q |
| |
|
||||| || ||| ||||||||| |||||| |
|
|
| T |
30053320 |
ttgaaaagtttcacagcttcatccaccat |
30053292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 227
Target Start/End: Complemental strand, 30135168 - 30134997
Alignment:
| Q |
56 |
ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa |
155 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | ||||||||||| || | ||||||||||||||||||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
30135168 |
ttgtaagtgatcacattagcaggttgacctctttcatgcatctcatctataagatcccaaacatcagaggttctccccgatatgcaaagtccatcaataa |
30135069 |
T |
|
| Q |
156 |
gagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcat |
227 |
Q |
| |
|
| ||| |||| | | || | |||||||| || ||||||||||||| || ||||||||| | ||||||| |
|
|
| T |
30135068 |
gcgaagtgtacgtgaatgtgtcaggagtcattcttttggaatgcatttcgtttaagagattcacggcttcat |
30134997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 234
Target Start/End: Original strand, 21160581 - 21160759
Alignment:
| Q |
56 |
ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa |
155 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||| ||||||||| | | |||||||||| |||||||||||||||| ||||| ||| ||||| |||| |
|
|
| T |
21160581 |
ttgtaagtgatcacatcagcaggttggcctctattatgcatctcatttacaagatcccaagcatcagagattctcccatatttgagaagaccatcgataa |
21160680 |
T |
|
| Q |
156 |
gagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat |
234 |
Q |
| |
|
| |||||||||| |||| ||| |||| ||| ||| | ||||||||||||| |||||||| | ||||||| |||||| |
|
|
| T |
21160681 |
gtgaattgtatgttacaatatcaggagccatgttttttaaatgcatttctttaaagagattaacggcttcatccaccat |
21160759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 234
Target Start/End: Complemental strand, 24898098 - 24897942
Alignment:
| Q |
78 |
gttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatt |
177 |
Q |
| |
|
|||| ||| |||||||||| || || | |||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||| |||||| |||| ||| |
|
|
| T |
24898098 |
gttgacctctatcatgcatatcatctataagatcccaaacatcagatattttccccgatttgcaaagtccatcaataagtgaactgtatgctacaatatc |
24897999 |
T |
|
| Q |
178 |
tggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat |
234 |
Q |
| |
|
|||| ||| ||| | |||||| ||||||||||||||| ||||||||| |||||| |
|
|
| T |
24897998 |
aggagccatgttttttaaatgcaattctttgaagagattgacagcttcatccaccat |
24897942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 234
Target Start/End: Complemental strand, 30029180 - 30029003
Alignment:
| Q |
57 |
tgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataag |
156 |
Q |
| |
|
|||| |||||||||||||| | ||| ||| ||||| |||||| |||| ||||||| |||||| || ||||| || ||||| |||||||||| |||||| |
|
|
| T |
30029180 |
tgtacgtgatcacattagctgcttgacctctatcacacatctcatcaataagatccaaaacatacgaaattcttccggatttacaaagtccataaataag |
30029081 |
T |
|
| Q |
157 |
agaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat |
234 |
Q |
| |
|
||||||||| | || ||||| ||| |||||||| ||||||||| || || |||||| ||||||||| |||||| |
|
|
| T |
30029080 |
agaattgtacgtcaccgtattaggaaccatatttcgtaaatgcattttcttaaaaagattcacagcttcatccaccat |
30029003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 30577761 - 30577902
Alignment:
| Q |
93 |
gcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttct |
192 |
Q |
| |
|
||||||| || | |||||||||||||| ||||||||| || |||||| |||||| |||||||| | | |||||| || ||||| ||||||||| || | |
|
|
| T |
30577761 |
gcatctcatctataagatcccaaacataagagattcttcccaatttgccaagtccgtcaataagggtactgtatgttatagtatcaggagtcatactttt |
30577860 |
T |
|
| Q |
193 |
ggaatgcatttctttgaagagattcgcagcttcattcaccat |
234 |
Q |
| |
|
| | ||||||||||| |||||| || ||||||||| |||||| |
|
|
| T |
30577861 |
gaattgcatttctttaaagagaatcacagcttcatccaccat |
30577902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 16702111 - 16702232
Alignment:
| Q |
56 |
ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa |
155 |
Q |
| |
|
||||||||||| ||||| | |||||||||| ||||| |||||| |||||||| | |||| ||| ||| | |||||| |||||||| | ||||||||||| |
|
|
| T |
16702111 |
ttgtaagtgattacattgggaggttggcctctatcacgcatctgatcaagaagcttccaagcatgagaaagtctcccagatttgcagaatccatcaataa |
16702210 |
T |
|
| Q |
156 |
gagaattgtatgatacagtatt |
177 |
Q |
| |
|
||| ||||| ||||| ||||| |
|
|
| T |
16702211 |
gagtgttgtaagatactgtatt |
16702232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 29949457 - 29949511
Alignment:
| Q |
5 |
agacctctagcaatcatttcacgaagaagtttcacagcgtcatcattcttgttgt |
59 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| | |||||||||||||| |
|
|
| T |
29949457 |
agacctctaacaatcatttcacgaagaagtttaacagccttatcattcttgttgt |
29949511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 29953254 - 29953308
Alignment:
| Q |
5 |
agacctctagcaatcatttcacgaagaagtttcacagcgtcatcattcttgttgt |
59 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| | |||||||||||||| |
|
|
| T |
29953254 |
agacctctaacaatcatttcacgaagaagtttaacagccttatcattcttgttgt |
29953308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 16517685 - 16517626
Alignment:
| Q |
108 |
gatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatg |
167 |
Q |
| |
|
|||| ||||||||||||| ||||||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
16517685 |
gatcacaaacatcagagaatctccctcgtttgcaaagtaaatcaataagtgaattgtatg |
16517626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 24738755 - 24738802
Alignment:
| Q |
5 |
agacctctagcaatcatttcacgaagaagtttcacagcgtcatcattc |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| || | ||||||| |
|
|
| T |
24738755 |
agacctctagcaatcatttcacgaagaagttccactgccttatcattc |
24738802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 24935104 - 24935057
Alignment:
| Q |
7 |
acctctagcaatcatttcacgaagaagtttcacagcgtcatcattctt |
54 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || | ||||||||| |
|
|
| T |
24935104 |
acctctagcaatcatttcacgtagaagtttcaccgccttatcattctt |
24935057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 15714983 - 15715060
Alignment:
| Q |
88 |
atcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgta |
165 |
Q |
| |
|
||||||||||| |||||||| |||||| ||| ||| | |||||| |||||||| | ||||||||||||||| |||| |
|
|
| T |
15714983 |
atcatgcatcttatcaagaagctcccaagcatgagaaactctcccagatttgcataaaccatcaataagagaactgta |
15715060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 30135565 - 30135516
Alignment:
| Q |
5 |
agacctctagcaatcatttcacgaagaagtttcacagcgtcatcattctt |
54 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| || | ||||||||| |
|
|
| T |
30135565 |
agacctctatcaatcatttcacaaagaagtttcactgccttatcattctt |
30135516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 24731294 - 24731262
Alignment:
| Q |
5 |
agacctctagcaatcatttcacgaagaagtttc |
37 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
24731294 |
agacctcttgcaatcatttcacgaagaagtttc |
24731262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 30029787 - 30029755
Alignment:
| Q |
5 |
agacctctagcaatcatttcacgaagaagtttc |
37 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
30029787 |
agacctctagcaatcatttcacaaagaagtttc |
30029755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 234
Target Start/End: Original strand, 44262549 - 44262727
Alignment:
| Q |
56 |
ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa |
155 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||| ||||||||| || | |||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
44262549 |
ttgtaagtgataacatcagcaggttggcctatattatgcatctcatctataagatcccaaacatcagatattcttcctgatttgcaaagtccatcaataa |
44262648 |
T |
|
| Q |
156 |
gagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat |
234 |
Q |
| |
|
| |||||||||| || ||||| |||| ||| ||| | |||| ||||||||||||||| | ||||||| |||||| |
|
|
| T |
44262649 |
gtgaattgtatgttatagtatcgggagccatgttttttatttgcagttctttgaagagattgacggcttcatccaccat |
44262727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 44262155 - 44262187
Alignment:
| Q |
7 |
acctctagcaatcatttcacgaagaagtttcac |
39 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
44262155 |
acctctaacaatcatttcacgaagaagtttcac |
44262187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 234
Target Start/End: Original strand, 43846 - 44003
Alignment:
| Q |
77 |
ggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtat |
176 |
Q |
| |
|
||||| ||| ||||||||||||| || | || ||||||| ||||||| ||||||||| ||||||||||||||||||| | |||||||||| |||||| | |
|
|
| T |
43846 |
ggttgacctctatcatgcatctcatctataaaatcccaagcatcagacattctccctaatttgcaaagtccatcaattaaggaattgtatgttacagtgt |
43945 |
T |
|
| Q |
177 |
ttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat |
234 |
Q |
| |
|
| ||| ||||||| ||||||||||||||||||||||||| | ||||||| |||||| |
|
|
| T |
43946 |
taggaaccatatttttggaatgcatttctttgaagagattaactgcttcatccaccat |
44003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 56 - 234
Target Start/End: Complemental strand, 24226863 - 24226685
Alignment:
| Q |
56 |
ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa |
155 |
Q |
| |
|
||||||||||| | ||||| ||||| ||| ||||||||||||| | | | ||||||||||||| | ||||||| ||||||||||||||||||||| | |
|
|
| T |
24226863 |
ttgtaagtgattatgttagctggttgacctctatcatgcatctcacctatgaaatcccaaacatcatatattctccttgatttgcaaagtccatcaatta |
24226764 |
T |
|
| Q |
156 |
gagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccat |
234 |
Q |
| |
|
| |||||||||| |||||| | ||| ||||||| ||||||||||||||||||| ||||| || ||||||| |||||| |
|
|
| T |
24226763 |
gggaattgtatgctacagtgtcaggaaccatatttttggaatgcatttctttgaaaagatttgcggcttcatccaccat |
24226685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 11991356 - 11991249
Alignment:
| Q |
55 |
gttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaata |
154 |
Q |
| |
|
||||||||||| | ||| || ||||| || |||||||||| || |||| ||| |||||| ||| |||||||||||||||||||| | |||||||| |
|
|
| T |
11991356 |
gttgtaagtgaatatattggctggttgaccattatcatgcatttcatcaacaagctcccaagcataggagattctccctgatttgcacaaaccatcaatg |
11991257 |
T |
|
| Q |
155 |
agagaatt |
162 |
Q |
| |
|
|||||||| |
|
|
| T |
11991256 |
agagaatt |
11991249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 11991751 - 11991719
Alignment:
| Q |
5 |
agacctctagcaatcatttcacgaagaagtttc |
37 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
11991751 |
agacctctagcaatcatttcacgcagaagtttc |
11991719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0308
Description:
Target: scaffold0308; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 9034 - 8929
Alignment:
| Q |
60 |
aagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagaga |
159 |
Q |
| |
|
||||||| ||||| |||||||| ||| ||||||||||||| ||||| | |||||| ||| ||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
9034 |
aagtgattacattggcaggttgacctctatcatgcatctcatcaagcaactcccaagcatgagaaattctccctgatttgcacaaaccatcaataagaga |
8935 |
T |
|
| Q |
160 |
attgta |
165 |
Q |
| |
|
| |||| |
|
|
| T |
8934 |
actgta |
8929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 9434 - 9402
Alignment:
| Q |
5 |
agacctctagcaatcatttcacgaagaagtttc |
37 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
9434 |
agacctctagcaatcatttcacgtagaagtttc |
9402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 13093540 - 13093616
Alignment:
| Q |
107 |
agatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagt |
183 |
Q |
| |
|
||||| ||||||||| ||| |||| ||||||||||||||||||||||||| |||||||||| |||| |||| ||||| |
|
|
| T |
13093540 |
agatcacaaacatcatagaatctctctgatttgcaaagtccatcaataagtgaattgtatgttacaatattaggagt |
13093616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 1176 - 1285
Alignment:
| Q |
56 |
ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa |
155 |
Q |
| |
|
||||||||||||||||| ||| |||| ||| |||||||||||| |||||||| ||||| ||| ||| ||| |||||| |||||| | |||||||| | |
|
|
| T |
1176 |
ttgtaagtgatcacatttgcatgttgacctctatcatgcatctaatcaagaagctcccatgcatgagaaattttccctgctttgcacaaaccatcaatga |
1275 |
T |
|
| Q |
156 |
gagaattgta |
165 |
Q |
| |
|
|||||||||| |
|
|
| T |
1276 |
gagaattgta |
1285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0652 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0652
Description:
Target: scaffold0652; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 1251 - 1336
Alignment:
| Q |
56 |
ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgca |
141 |
Q |
| |
|
|||||||||||||||| |||||||| ||| |||||||||||| |||||||| ||||| ||| ||| ||||||||||||||||| |
|
|
| T |
1251 |
ttgtaagtgatcacatcggcaggttgacctctatcatgcatctgatcaagaagctcccatgcatgagaaattctccctgatttgca |
1336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 121436 - 121545
Alignment:
| Q |
56 |
ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa |
155 |
Q |
| |
|
||||| ||||| | ||| |||||||| ||| |||||||||||| |||||||| ||||| ||| ||||||||||||||||||||| | ||||||||| |
|
|
| T |
121436 |
ttgtatgtgataatattggcaggttgacctctatcatgcatctgatcaagaagctcccatgcatgagagattctccctgatttgcacaaagcatcaataa |
121535 |
T |
|
| Q |
156 |
gagaattgta |
165 |
Q |
| |
|
||||| |||| |
|
|
| T |
121536 |
gagaactgta |
121545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 140699 - 140667
Alignment:
| Q |
5 |
agacctctagcaatcatttcacgaagaagtttc |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
140699 |
agacctctagcaatcatttcacgaagaagtttc |
140667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 137813 - 137781
Alignment:
| Q |
5 |
agacctctagcaatcatttcacgaagaagtttc |
37 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
137813 |
agacctctagcaaccatttcacgaagaagtttc |
137781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 165
Target Start/End: Complemental strand, 3276 - 3167
Alignment:
| Q |
56 |
ttgtaagtgatcacattagcaggttggcctatatcatgcatctcgtcaagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataa |
155 |
Q |
| |
|
||||||||||| | || ||| ||||| || ||||| ||||||| |||| ||| |||||| ||| ||||||||||| |||||||| | |||||||| | |
|
|
| T |
3276 |
ttgtaagtgattatatcagctggttgaccactatcacgcatctcatcaacaagctcccaagcataggagattctcccagatttgcacaaaccatcaatta |
3177 |
T |
|
| Q |
156 |
gagaattgta |
165 |
Q |
| |
|
|||||||||| |
|
|
| T |
3176 |
gagaattgta |
3167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 125683 - 125715
Alignment:
| Q |
5 |
agacctctagcaatcatttcacgaagaagtttc |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
125683 |
agacctctagcaatcatttcacgaagaagtttc |
125715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 9782985 - 9782951
Alignment:
| Q |
5 |
agacctctagcaatcatttcacgaagaagtttcac |
39 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
9782985 |
agacctctagcaatcatttcacaaagaagtttcac |
9782951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 27792 - 27760
Alignment:
| Q |
5 |
agacctctagcaatcatttcacgaagaagtttc |
37 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
27792 |
agacctctagcaatcatttcacgtagaagtttc |
27760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 30878 - 30910
Alignment:
| Q |
5 |
agacctctagcaatcatttcacgaagaagtttc |
37 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
30878 |
agacctctaacaatcatttcacgaagaagtttc |
30910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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