View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_low_4 (Length: 766)
Name: NF7777_low_4
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 274 - 588
Target Start/End: Complemental strand, 1186650 - 1186343
Alignment:
| Q |
274 |
taagtcatgccacgagtgtgattgttaagtagtatgataagaaaatatctttgtaaaggactaaacaaaatttgctttaatctggtatagttcttacatg |
373 |
Q |
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| T |
1186650 |
taagtcatgccacgagtgtgattgttaagtggtatgataagaaaatatcttgttaaaggactaaacaaaatttgctttaatctggtatagttattacatg |
1186551 |
T |
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| Q |
374 |
atggtttctttaatctggtataataagtgttcgtttggatacgcatacaaactatatttctcgtgtctcaatgtcttctcgctgtgataattgtgaagct |
473 |
Q |
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| T |
1186550 |
atggtt--------ctggtataataagtgttcgtttggatacgcatccaaactatttttctcgcgtctcaatgtcttctcgctgtgataattgtgaagct |
1186459 |
T |
|
| Q |
474 |
acagattgtagaagtgaaaaaacgcacggtggcacgcaaaaacaaacacacgaaaatagtctatatcaaatgtgagaagtaa-gtaagagtttgactcct |
572 |
Q |
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| T |
1186458 |
acagattgtagaagtgaaaaaacgcacggtggcacgcgaaaacaaacacacgaaaatagtctatatgaaatgtgagaagtaaggaaagagtttgactcct |
1186359 |
T |
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| Q |
573 |
caaaagtatatgcatt |
588 |
Q |
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| T |
1186358 |
caaaagtatatgcatt |
1186343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 1186928 - 1186679
Alignment:
| Q |
19 |
aatgttgctagttcatatcttatgtaaatgcctttcatgatgtattttattttttatttgtttaatgacccctggaggccctgacaagaggtctaagaat |
118 |
Q |
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| T |
1186928 |
aatgttgctagttcatatctttcgtaaatgcctttcatgatgtatttgattttttatttgtttaatgacctctggaggccctgacaagaggtctaagaat |
1186829 |
T |
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| Q |
119 |
aactttgtattgagtgttttaaacaacaaggcttaattgttgcaattacgcattgttctcggtttttaatcataagataagatgagcttcaatatagttt |
218 |
Q |
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| T |
1186828 |
aactttgtattgagtgttttaatcaacaaggctttattgttgcgattacgcattgttctcggtttttaatcataagataagatgagcttcaatatagttt |
1186729 |
T |
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| Q |
219 |
gtgcaggttctgctcatagtatgtttcttgatgttgagtgcagattctgct |
269 |
Q |
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| T |
1186728 |
gtgcaggttctgctcatagtatgtctc-tgatgttgagtgcaggttctgct |
1186679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 588 - 751
Target Start/End: Complemental strand, 1007149 - 1006986
Alignment:
| Q |
588 |
ttgatgtatcagattcttcttctgatgatgattcaccaaatgaaacccctaatggcgccaccgttcttccttcaattcacattcacattccgcttccaaa |
687 |
Q |
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| T |
1007149 |
ttgatgtatcagattcttcttcttctgatgattcaccaaatgaaacccctaatgtcgccaccgttcttccttcaattcacattcacattccgcttccaaa |
1007050 |
T |
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| Q |
688 |
tccctcttcagatgtcaactcactaggtattattattctattccttttcaatttttgttttcat |
751 |
Q |
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| T |
1007049 |
tccctcttcagatgtcaactctctaggtattattcttctattccttttcaatttttgttttcat |
1006986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 17001868 - 17001621
Alignment:
| Q |
19 |
aatgttgctagttcatatcttatgtaaatgcctttcatgatgtattttattttttatttgtttaatgacccctggaggccctgacaagaggtctaagaat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17001868 |
aatgttgctagttcatatcttatgtaaatgcctttcatgatgtatttgattttttatttgtttaatgacctctggaggccctgacaagaggtctaagaat |
17001769 |
T |
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| Q |
119 |
aactttgtattgagtgttttaaacaacaaggcttaattgttgcaattacgcattgttctcggtttttaatcataagataagatgagcttcaatatagttt |
218 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17001768 |
aactttgtattgagtgttttaaacaacagggctttattgttgcgattacgcattgttctcggtttttaatcataagataagatgagcttcaatatatttt |
17001669 |
T |
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| Q |
219 |
gtgcaggttctgctcatagtatgtttcttgatgttgagtgcagattctg |
267 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||| ||||| |
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| T |
17001668 |
gtgcaggttctgctcatagtatgtctc-tgatgttgagtgcaggttctg |
17001621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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