View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_low_41 (Length: 248)
Name: NF7777_low_41
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_low_41 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 2138788 - 2138554
Alignment:
| Q |
18 |
taaaagtctgcaaataattaagtgtgttttctatttgtcaggaatttagcttgagattaatgttccttaagaggtctggcaatgacactatatatgttgt |
117 |
Q |
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| T |
2138788 |
taaaagtctgcaaataattaagtgtgttttctatttgtcaggaatttagcttgagattaatgttccttaagaggtctagcaatgacactatatatgttgt |
2138689 |
T |
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| Q |
118 |
tatcagctagcaagacagaggtcataggaggatggaaccaccaaggcaccaactaaccactatttcttcgataaaaacttaat----ttaagtgaatacg |
213 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| |
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| T |
2138688 |
tatcagctagcaagacagaggtcataggaggagggaaccaccaaggcaccaactaaccattatttcttcgataaaaacttagtgttattaagtgaatacg |
2138589 |
T |
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| Q |
214 |
ttgtcaattgttatgacttgaagtgtgtgtgtttt |
248 |
Q |
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||| |||||||||||||||| ||||||||| |||| |
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| T |
2138588 |
ttgccaattgttatgacttgtagtgtgtgtttttt |
2138554 |
T |
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