View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_low_42 (Length: 248)
Name: NF7777_low_42
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 6338753 - 6338985
Alignment:
| Q |
1 |
ctcaatataccatatcaaaacaagtccatacccggcaaacagaatcgtgtcctccagtcactaaaatgtcaaatgtgggatgaagagccaagcaataaac |
100 |
Q |
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| T |
6338753 |
ctcaatataccatatcaaaacaagtccatacccggcaaacagaattgtgtcctccagtcactaaaatgtcaaatgtgggatgaagagccaagcaataaac |
6338852 |
T |
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| Q |
101 |
actactaagatgaccatgataagaactaataacctaaataaaataatataacgttcattagtggctcgatatatctgataagttcagtgattgctgaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6338853 |
actactaagatgaccatgataagaactaataacctaaataaaataatataacgttcattagtggctcgatatatctgataagttcagtgattgctgaaat |
6338952 |
T |
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| Q |
201 |
attcacctgaaaatcatgaggattttacctcat |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6338953 |
attcacctgaaaatcatgaggattttacctcat |
6338985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 213
Target Start/End: Original strand, 14193483 - 14193673
Alignment:
| Q |
24 |
gtccatacccggcaaacagaatcgtgtcctccagtcactaaaatgtcaaatgtgggatgaagagccaagcaataaacactactaagatgaccatgataag |
123 |
Q |
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|||||||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||| |||||||| ||||||| |
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| T |
14193483 |
gtccatacccggcagacagaatcacgtcctccagtcagtaaaatgtcaattgtgggatgaatagccaagcaataaacaccactcagatgaccgtgataag |
14193582 |
T |
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| Q |
124 |
aactaataacctaaataaaataatataacgttcattagtggctcgatatatctgata-agttcagtgattgctgaaatattcacctgaaaa |
213 |
Q |
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| T |
14193583 |
acctaataacctaaataaaacaatataacatgctttagtggccagatatattcaatagagttccgtaattgctgaaatattcaccagaaaa |
14193673 |
T |
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