View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_low_5 (Length: 714)
Name: NF7777_low_5
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 662; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 18 - 699
Target Start/End: Original strand, 880581 - 881262
Alignment:
| Q |
18 |
aaaccaaggatcattcataatatcaacaattgaatacctctttttaggatcaggaacaagaagattcgaaatcaatatcttagcatgtggagaaatccat |
117 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
880581 |
aaaccaaggatgattcataatatcaacaattgaatacctctttttaggatcaggaacaagaagattcgaaatcaacatcttagcatgtggagaaatccat |
880680 |
T |
|
| Q |
118 |
tcaggaaactcatattcgcctttaaaagtctttctataaattctcataacattctcaccttgaaaaggaagatatccacaaagtaaagcatagagaatta |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
880681 |
tcaggaaactcatattcgcctttaaaagtctttctataaattctcataacattctcaccttgaaaaggaagatatccacaaagtaaagcatagagaatta |
880780 |
T |
|
| Q |
218 |
ccccacaagaccataagtcagctttggaaccatcgtaacctttcttcttcaaaacctcaggtgccacgtaagcaggggttccacacggagttaaaagcat |
317 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
880781 |
ccccacaagaccataagtcagctttagaaccatcgtaacctttcttcttcaaaacctcaggtgccacgtaagcaggggttccacatggagttaaaagcat |
880880 |
T |
|
| Q |
318 |
cccatcctctcggcgttgttctggcaacgctgagagtccaaaatcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcg |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
880881 |
cccatcctctcggcgttgttctggcaacgctgagagtccaaaatcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcg |
880980 |
T |
|
| Q |
418 |
cgatgtgtgacaccacgactatggcaaaaatcaacagcactaatgagttgttgaaaatactttctagcaacatcttcattcaattttccttttgctacct |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
880981 |
cgatgtgtgacaccacgactatggcaaaaatcaacagcactaatgagttgttgaaagtactttctagcaacatcttcattcaattttccttttgctacct |
881080 |
T |
|
| Q |
518 |
tgttgaagagttcacctccttttacatattccactacaagaaagatttttccctttgttgccataacttctttgagttcaacgatatgaggatggcgaac |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
881081 |
tgttgaagagttcacctccttttacatattccactacaagaaagatttttccctttgttgccataacttctttgagttcaacgatatgaggatggcgaac |
881180 |
T |
|
| Q |
618 |
gagacgcatcactgaaacttcgcgcttgatttgcttcaccaacctctcttttttcaacctctctttctttatcaccttgatg |
699 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
881181 |
gagacgcatcactgaaacttcgcgcttgatttgcttcaccaacctctcttttttcaacctctctttctttatcaccttgatg |
881262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 9995043 - 9995110
Alignment:
| Q |
355 |
ccaaaatcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcgcgatg |
422 |
Q |
| |
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|||||||| |||||||| | | | ||||||||||||| || |||||||||||||||||||| ||||| |
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| T |
9995043 |
ccaaaatctgagaccttcaaatttccgttttcatccaacagaagattttctggtttcaaatcacgatg |
9995110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 6e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 18 - 668
Target Start/End: Original strand, 45268075 - 45268725
Alignment:
| Q |
18 |
aaaccaaggatcattcataatatcaacaattgaatacctctttttaggatcaggaacaagaagattcgaaatcaatatcttagcatgtggagaaatccat |
117 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| ||||||||| ||||||| |||||| | ||| ||||||||| |||||||| || ||||||||| |
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| T |
45268075 |
aaaccaaggatctttcataatatcaggaattgaaaacctcttttcaggatcaacaacaagcaaattagaaatcaatttcttagcacccggtgaaatccat |
45268174 |
T |
|
| Q |
118 |
tcaggaaactcatattcgcctttaaaagtctttctataaattctcataacattctcaccttgaaaaggaagatatccacaaagtaaagcatagagaatta |
217 |
Q |
| |
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|| || || |||| || ||||||||| || |||||||| ||||||||||||||||||||||| || | |||||||||||| |||||| | ||||| | |
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| T |
45268175 |
tctggtaaaacataatcagctttaaaagatttgctataaatcctcataacattctcaccttgaaagggcaaatatccacaaagcaaagcaaaaagaataa |
45268274 |
T |
|
| Q |
218 |
ccccacaagaccataagtcagctttggaaccatcgtaacctttcttcttcaaaacctcaggtgccacgtaagcaggggttccacacggagttaaaagcat |
317 |
Q |
| |
|
| ||||||||||| | |||||||| || ||||| ||||| ||||||||||||| |||||||| || |||||||| || ||||| || || | |||||| |
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| T |
45268275 |
caccacaagaccaaatatcagcttttgatccatcataaccaatcttcttcaaaacttcaggtgcaacataagcaggagtcccacaaggtgtgagaagcat |
45268374 |
T |
|
| Q |
318 |
cccatcctctcggcgttgttctggcaacgctgagagtccaaaatcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcg |
417 |
Q |
| |
|
||||| || ||||| || || || ||||| | |||||||| || ||||| || ||||| ||||||||||| || ||||| || ||||| | ||| |
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| T |
45268375 |
tccatcggatctacgttgatcaggtaatgctgataaaccaaaatcagataccttaagatcttcattttcatccaaaagaagattctcgggtttaagatca |
45268474 |
T |
|
| Q |
418 |
cgatgtgtgacaccacgactatggcaaaaatcaacagcactaatgagttgttgaaaatactttctagcaacatcttcattcaattttccttttgctacct |
517 |
Q |
| |
|
|| ||||| || || |||||||| || ||||| |||||||| || | |||||||||||||||||| |||| || ||| | || ||| ||||| || || | |
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|
| T |
45268475 |
cggtgtgtaactccccgactatgacagaaatctacagcactgatcaattgttgaaaatactttctggcaatattttcttccattttacctttggcgactt |
45268574 |
T |
|
| Q |
518 |
tgttgaagagttcacctccttttacatattccactacaagaaagatttttccctttgttgccataacttctttgagttcaacgatatgaggatggcgaac |
617 |
Q |
| |
|
|| ||| |||||||||||||| || ||||| || || | |||| ||| |||| | ||||| |||||||| || ||||| ||||| ||||| ||||| |
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| T |
45268575 |
tggcgaaaagttcacctcctttgacgtattcaacaaccatgaagactttagccttgttagccattacttctttaagctcaacaatatgtggatgacgaac |
45268674 |
T |
|
| Q |
618 |
gagacgcatcactgaaacttcgcgcttgatttgcttcaccaacctctcttt |
668 |
Q |
| |
|
|||||||||||| |||||||| || |||||||| |||| || ||||||||| |
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|
| T |
45268675 |
gagacgcatcacggaaacttcacgtttgatttgtttcatcagcctctcttt |
45268725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 334 - 518
Target Start/End: Original strand, 3294060 - 3294244
Alignment:
| Q |
334 |
tgttctggcaacgctgagagtccaaaatcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcgcgatgtgtgacaccac |
433 |
Q |
| |
|
||||| ||||| || ||||| |||||||||||||| || || | ||||||||||| | | || ||| || ||||| ||||| ||||| | ||||| | |
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|
| T |
3294060 |
tgttcaggcaaagcagagagaccaaaatcggagactttaagattctcgttttcatcgagtaataaattctccggttttaaatcacgatgagaaacacctc |
3294159 |
T |
|
| Q |
434 |
gactatggcaaaaatcaacagcactaatgagttgttgaaaatactttctagcaacatcttcattcaattttccttttgctacctt |
518 |
Q |
| |
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|||||||||| |||| |||||||| || || ||||| || |||||||| |||| ||||| || ||||| |||||||||||||| |
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|
| T |
3294160 |
tactatggcaataatctacagcacttataagctgttggaagtactttcttgcaagttcttccttaaatttaccttttgctacctt |
3294244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 27312268 - 27312300
Alignment:
| Q |
270 |
aacctcaggtgccacgtaagcaggggttccaca |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27312268 |
aacctcaggtgccacgtaagcaggggttccaca |
27312300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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