View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7777_low_50 (Length: 223)
Name: NF7777_low_50
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_low_50 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 31934881 - 31935053
Alignment:
| Q |
34 |
agaggtagaggaatggaaagattgtacctatataaggtacctagatataagaagtaggggatggagagattgtacctatataaggtgtaaatattctcat |
133 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31934881 |
agaggtaggggaatggaaagatcgtacctatataaggtacctagatataagaagtaggggatggagagattgtacctatataaggtgtaaatattctcat |
31934980 |
T |
|
| Q |
134 |
ttttagttatagtggatattgacaattgattaaatttaacaannnnnnnnagttccacttgatttgagtcttc |
206 |
Q |
| |
|
||||| || || || ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31934981 |
ttttatttttaatgaatattgacaattgattaaatttaacaattttttttagttccacttgatttgagtcttc |
31935053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University