View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_low_6 (Length: 695)
Name: NF7777_low_6
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 203 - 675
Target Start/End: Original strand, 11492408 - 11492882
Alignment:
| Q |
203 |
atcaagtgctcaagtattttgttattggaagctaatataacatactaatatcaacttggtactaattttcataaaatagaggcggctttagcatttaata |
302 |
Q |
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| T |
11492408 |
atcaagtgctcaagtattttgttattggaagctaatataacatactaatatcaacttggtactaattttcataaaatagaggcggctttagcattcaata |
11492507 |
T |
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| Q |
303 |
tttttcttagatctatatatattgttttaaaattagtactattgttcaataaatgctatacaaatccaaccaaaaacaacaattagcactgaacacatga |
402 |
Q |
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| T |
11492508 |
tttttcttagatctatatatattgttttaaaattagtactattgttcaataaatgctatacaaatccaaccaaaaacaacaattagcactgaacacatga |
11492607 |
T |
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| Q |
403 |
tttttcatgtgcaattggaaactccaaatatatatcatcataaaataaaacaaacacctgatcaattctgtaacaaatctaaaactaacagtgttttgtt |
502 |
Q |
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| T |
11492608 |
tttttcatgtgcaattggaaactccaaatatatatcatcataaaataaaacaaacacctgatcaattctgtaacaaatctaaaactaacagtgttttgtt |
11492707 |
T |
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| Q |
503 |
ctctttcaccataaaataatgaaaaatatttaaagctagcttttgaaag--nnnnnnnnnggtatatgacctccagcaaaatcatggnnnnnnnaggtct |
600 |
Q |
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| T |
11492708 |
ctctttcaccataaaataatgaaaaatatttaaagctagcttttgaaagaaaaaaaaataggtatatgacctctagcaaaatcatggtttttttaggtct |
11492807 |
T |
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| Q |
601 |
tagtgactgtaatttttcaaaattgagaaaatcagtcaggtttaactgtaattctatacaacatcaagtatcaac |
675 |
Q |
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| T |
11492808 |
ttgtgaccgtaatttttcacaattgagacaatcagtcaggtttgattgtgattctatacaacatcaagtatcaac |
11492882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 11492261 - 11492381
Alignment:
| Q |
76 |
tatgtcattttacaatttacgatatcatttgaacattaacgtttcttttcatattatttactatttattacttttgatataaatgtgaaatgatcaaatg |
175 |
Q |
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| T |
11492261 |
tatgtcattttacaatttacgatatcatttgaacattaac-----ttttcatattatttactatttattacttttgatataaatgtgaaatgatcaagtg |
11492355 |
T |
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| Q |
176 |
ctcaaaatattttctgattctcaaat |
201 |
Q |
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| T |
11492356 |
ctcaaaatattttctgattctcaaat |
11492381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 11492227 - 11492269
Alignment:
| Q |
8 |
tcgaagaatatatgcacacctttgtttcacaatatatgtcatt |
50 |
Q |
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| T |
11492227 |
tcgaacaatatatgcacacctctgtttcacaatatatgtcatt |
11492269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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