View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7778_high_1 (Length: 394)
Name: NF7778_high_1
Description: NF7778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7778_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 106 - 342
Target Start/End: Original strand, 4556686 - 4556919
Alignment:
| Q |
106 |
ccaacctaattggtcatgtaa-tatgtaaaagttattgcaatatttcattaactatttgaaagtcaatactgatatacatttgtctgtatttctgcatgt |
204 |
Q |
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| T |
4556686 |
ccaacctaattggtcatgtaaatatgtaaaagttattgcaatatttcattaactatgtgaaagtcaatactg-tatacatttgtctgtatttctgcatgt |
4556784 |
T |
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| Q |
205 |
attgatgaacatacactataataaatacatgaagaaattaaaacaaaaaactgaaactctcaaatatgcagatagttacacctttcaaactatttgtata |
304 |
Q |
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| T |
4556785 |
attgatgaacatatactataataaatacatgaagaaa---aacaaaaaaactgaaactctgaactaagaagattgttacacctttcatactatatgtata |
4556881 |
T |
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| Q |
305 |
gctagattagaaattatgtgaaatattgaaaactgatt |
342 |
Q |
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| T |
4556882 |
gctagattagaaataatgtgaaatattgaaaactgatt |
4556919 |
T |
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