View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7778_high_2 (Length: 298)

Name: NF7778_high_2
Description: NF7778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7778_high_2
NF7778_high_2
[»] chr6 (3 HSPs)
chr6 (1-293)||(29307204-29307495)
chr6 (160-293)||(29302836-29302968)
chr6 (161-293)||(30485784-30485915)
[»] chr4 (7 HSPs)
chr4 (1-293)||(27726751-27727042)
chr4 (1-293)||(45969480-45969771)
chr4 (1-181)||(24151335-24151516)
chr4 (161-293)||(45965105-45965236)
chr4 (161-293)||(27731286-27731417)
chr4 (161-293)||(32998461-32998592)
chr4 (16-121)||(42320591-42320696)
[»] chr5 (5 HSPs)
chr5 (1-293)||(12525538-12525829)
chr5 (1-293)||(35845192-35845483)
chr5 (161-293)||(35840818-35840949)
chr5 (161-293)||(12530073-12530207)
chr5 (160-206)||(40902708-40902754)
[»] chr2 (4 HSPs)
chr2 (1-293)||(42304057-42304348)
chr2 (1-293)||(42909629-42909942)
chr2 (161-293)||(42914186-42914317)
chr2 (161-293)||(42299681-42299812)
[»] chr3 (1 HSPs)
chr3 (158-293)||(1747093-1747227)
[»] chr1 (4 HSPs)
chr1 (161-293)||(49221322-49221453)
chr1 (161-293)||(25484660-25484791)
chr1 (161-293)||(29283327-29283458)
chr1 (1-57)||(29279027-29279083)
[»] chr8 (3 HSPs)
chr8 (160-293)||(22757456-22757588)
chr8 (161-293)||(21609804-21609935)
chr8 (35-165)||(3370625-3370761)
[»] chr7 (2 HSPs)
chr7 (76-135)||(4129003-4129062)
chr7 (76-135)||(4126379-4126438)


Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 29307204 - 29307495
Alignment:
Q  1 acaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccattgaagattga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29307204 acaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccattgaagattaa 29307303  T
Q  101 gtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaagagtataga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29307304 gtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaagagtataga 29307403  T
Q  201 agcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacctagaataatcttgtaaccaagagaataatctag 293  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29307404 agcttggag-ttactctttgtcattaagagttaaaaatatctatattatgtagcaccacctagaataatcttgtaaccaaaagaataatctag 29307495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 160 - 293
Target Start/End: Original strand, 29302836 - 29302968
Alignment:
Q  160 atgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccac 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  29302836 atgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtt-actctttgtcattaagagttaaaaatatctatattatgtagcaccac 29302934  T
Q  260 ctagaataatcttgtaaccaagagaataatctag 293  Q
    ||||||||||||||||||||| ||||||||||||    
T  29302935 ctagaataatcttgtaaccaaaagaataatctag 29302968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 30485784 - 30485915
Alignment:
Q  161 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||    
T  30485784 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtt-actctttgtcattaagagttaaaaatatctatattatgtagcaccacc 30485882  T
Q  261 tagaataatcttgtaaccaagagaataatctag 293  Q
    |||||||||||||||||||| ||||||||||||    
T  30485883 tagaataatcttgtaaccaaaagaataatctag 30485915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 27727042 - 27726751
Alignment:
Q  1 acaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccattgaagattga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27727042 acaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccattgaagattga 27726943  T
Q  101 gtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaagagtataga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27726942 gtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggagacaatgttagaaattaaatcaagaaatatctagaagagtataga 27726843  T
Q  201 agcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacctagaataatcttgtaaccaagagaataatctag 293  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27726842 agcttggag-ttactctttgtcattaagagttaaaaatatctatattatgtagcaccacctagaataatcttgtaaccaaaagaataatctag 27726751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 45969480 - 45969771
Alignment:
Q  1 acaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccattgaagattga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45969480 acaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccattgaagattga 45969579  T
Q  101 gtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaagagtataga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45969580 gtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaagagtataga 45969679  T
Q  201 agcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacctagaataatcttgtaaccaagagaataatctag 293  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  45969680 agcttggag-ttactctttgtcattaagagttaaaaatatctatattatgtagcaccccctagaataatcttgtaaccaaaagaataatctag 45969771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 24151335 - 24151516
Alignment:
Q  1 acaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccattgaagattga 100  Q
    |||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24151335 acaagatacgagagttgattgctgaaaaagaagtggtgatcgagtattgtcccactgaagagcaaattgcggatatttttacaaagccattgaagattga 24151434  T
Q  101 gtcattttacaaattgaagaaaatgcttggaatgatg-aaagcttgatttaagggaggcaatgttagaaattaaatcaagaa 181  Q
      |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||    
T  24151435 agcattttacaaattgaagaaattgcttggaatgatgcaaagcttgatttaagggaggcgatgttagaagttaaatcaagaa 24151516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 45965105 - 45965236
Alignment:
Q  161 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||    
T  45965105 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtt-actctttgtcattaagagttaaaaatatctatattatgtagcaccacc 45965203  T
Q  261 tagaataatcttgtaaccaagagaataatctag 293  Q
    |||||||||||||||||||| ||||||||||||    
T  45965204 tagaataatcttgtaaccaaaagaataatctag 45965236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 27731417 - 27731286
Alignment:
Q  161 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacc 260  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||    
T  27731417 tgttagaaattaaatcaagaaatatctagaagagtataaaagcttggagtt-actctttgtcattaagagttaaaaatatctatattatgtagcaccacc 27731319  T
Q  261 tagaataatcttgtaaccaagagaataatctag 293  Q
    |||||||||||||||||||| ||||||||||||    
T  27731318 tagaataatcttgtaaccaaaagaataatctag 27731286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 32998592 - 32998461
Alignment:
Q  161 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||    
T  32998592 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtt-actctttgtcattaagagttaaaaatatctatattatgtagcaccacc 32998494  T
Q  261 tagaataatcttgtaaccaagagaataatctag 293  Q
    |||||||||||||||| ||| ||||||||||||    
T  32998493 tagaataatcttgtaaacaaaagaataatctag 32998461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 42320696 - 42320591
Alignment:
Q  16 taattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccattgaagattgagtcattttacaaatt 115  Q
    ||||||||||| |||||||||||||||||||| |||||| |||| | ||| |||  |||||||||| ||| || ||||||||||||| ||||||||| ||    
T  42320696 taattgctgaggaagaagtggtgatcgagtaccgtcccaatgaataacaagttgtggatatttttaaaaaacctttgaagattgagttattttacaattt 42320597  T
Q  116 gaagaa 121  Q
    ||||||    
T  42320596 gaagaa 42320591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 12525829 - 12525538
Alignment:
Q  1 acaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccattgaagattga 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12525829 acaagatacgagagttaattgctgagaaataagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttgcaaagccattgaagattga 12525730  T
Q  101 gtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaagagtataga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12525729 gtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaagagtataga 12525630  T
Q  201 agcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacctagaataatcttgtaaccaagagaataatctag 293  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  12525629 agcttggag-ttactctttgtcattaagagttaaaaatatctatattatgtagcaccatctagaataatcttgtaaccaaaagaataatctag 12525538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 35845192 - 35845483
Alignment:
Q  1 acaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccattgaagattga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35845192 acaagatacgagagttaattgctgagaaagaagtggtgatcgagtattgtcccactgaagagcaaattgcagatatttttacaaagccattgaagattga 35845291  T
Q  101 gtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaagagtataga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35845292 gtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaagagtataga 35845391  T
Q  201 agcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacctagaataatcttgtaaccaagagaataatctag 293  Q
    ||||||||| ||| ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35845392 agcttggag-ttattctttttcattaagagttaaaaatatctatattatgtagcaccacctagaataatcttgtaaccaaaagaataatctag 35845483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 35840818 - 35840949
Alignment:
Q  161 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||| |||||||||||||||||||||||||||    
T  35840818 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtt-attctttttcattaagagttaaaaatatctatattatgtagcaccacc 35840916  T
Q  261 tagaataatcttgtaaccaagagaataatctag 293  Q
    |||||||||||||||||||| ||||||||||||    
T  35840917 tagaataatcttgtaaccaaaagaataatctag 35840949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 12530207 - 12530073
Alignment:
Q  161 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtttactctttgtcattaagggtttaaaatatct---atattatgtagcacc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||   |||||||||||||||    
T  12530207 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggag-ttactctttgtcattaagagttaaaaatatctataatattatgtagcacc 12530109  T
Q  258 acctagaataatcttgtaaccaagagaataatctag 293  Q
    | ||||||||||||||||||||| ||||||||||||    
T  12530108 atctagaataatcttgtaaccaaaagaataatctag 12530073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 40902708 - 40902754
Alignment:
Q  160 atgttagaaattaaatcaagaaatatctagaagagtatagaagcttg 206  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  40902708 atgttagaaattaaataaagaaatatttagaagagtatagaagcttg 40902754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 42304057 - 42304348
Alignment:
Q  1 acaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccattgaagattga 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  42304057 acaagatacgagagttaattgccgagaaagaagtggtgatcgagtattgtcccactgaagagaaaattgcagatatctttacaaagccattgaagattga 42304156  T
Q  101 gtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaagagtataga 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42304157 gtcgttttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaagaaatatctagaagagtataga 42304256  T
Q  201 agcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacctagaataatcttgtaaccaagagaataatctag 293  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||    
T  42304257 agcttggag-ttactctttgtcattaagagttaaaaatatctatattatgtaacaccacctagaataatcttgtaaccaaaggaataatctag 42304348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 42909942 - 42909629
Alignment:
Q  1 acaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccattgaagattga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42909942 acaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactaaagagcaaattgcagatatttttacaaagccattgaagattga 42909843  T
Q  101 gtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgattt----------------------aagggaggcaatgttagaaattaaatcaa 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||||||||||||||||||    
T  42909842 gtcattttacaaattgaagaaaatgcttggaatgatgaaagcttgatttaagaatgatgaaagcttgatttaagggaggcaatgttagaaattaaatcaa 42909743  T
Q  179 gaaatatctagaagagtatagaagcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacctagaataatcttgtaacc 278  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42909742 gaaatatctagaagagtatagaagcttagag-ttactctttgtcattaagagttaaaaatatctatattatgtagcaccacctagaataatcttgtaacc 42909644  T
Q  279 aagagaataatctag 293  Q
    || ||||||||||||    
T  42909643 aaaagaataatctag 42909629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 42914317 - 42914186
Alignment:
Q  161 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||||||||||||    
T  42914317 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttagagtt-actctttgtcattaagagttaaaaatatctatattatgtagcaccacc 42914219  T
Q  261 tagaataatcttgtaaccaagagaataatctag 293  Q
    |||||||||||||||||||| ||||||||||||    
T  42914218 tagaataatcttgtaaccaaaagaataatctag 42914186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 42299681 - 42299812
Alignment:
Q  161 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacc 260  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||| |||||||||||||||||||||||||||    
T  42299681 tgttagaaattaaatcaagaaatatctagaagagtatagaagtttggagtt-actctttatcattaagagttaaaaatatctatattatgtagcaccacc 42299779  T
Q  261 tagaataatcttgtaaccaagagaataatctag 293  Q
    ||||||||||||||||||||  |||||||||||    
T  42299780 tagaataatcttgtaaccaaaggaataatctag 42299812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 158 - 293
Target Start/End: Complemental strand, 1747227 - 1747093
Alignment:
Q  158 caatgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcacc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||    
T  1747227 caatgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtt-actctttgtcattaagagttaaaaatatctatattatgtagcacc 1747129  T
Q  258 acctagaataatcttgtaaccaagagaataatctag 293  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1747128 acctagaataatcttgtaaccaaaagaataatctag 1747093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 49221453 - 49221322
Alignment:
Q  161 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||    
T  49221453 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtt-actctttgtcattaagagttaaaaatatctatattatgtagcaccacc 49221355  T
Q  261 tagaataatcttgtaaccaagagaataatctag 293  Q
    |||||||||||||||||||| ||||||||||||    
T  49221354 tagaataatcttgtaaccaaaagaataatctag 49221322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 25484791 - 25484660
Alignment:
Q  161 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| ||    
T  25484791 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtt-actctttgtcattaagagttaaaaatatctatattatgtagcacctcc 25484693  T
Q  261 tagaataatcttgtaaccaagagaataatctag 293  Q
    |||||||||||||||||||| ||||||||||||    
T  25484692 tagaataatcttgtaaccaaaagaataatctag 25484660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 29283458 - 29283327
Alignment:
Q  161 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacc 260  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||    
T  29283458 tgttagaaagtaaatcaagaaatatctagaagagtatagaagcttggagtt-actctttgtcattaagagttaaaaatatctatattatgtagcaccacc 29283360  T
Q  261 tagaataatcttgtaaccaagagaataatctag 293  Q
    |||||||||||||||||||| ||||||||||||    
T  29283359 tagaataatcttgtaaccaaaagaataatctag 29283327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29279083 - 29279027
Alignment:
Q  1 acaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactg 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29279083 acaagatacgagagttaattgctgagaaagaagtggtgatcgagtactgtcccactg 29279027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 160 - 293
Target Start/End: Complemental strand, 22757588 - 22757456
Alignment:
Q  160 atgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccac 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  22757588 atgttagaaattaaatcaagaaatatctagaagagtatagaagcttgaagtt-actctttgtcattaagagttaaaaatatctatattatgtagcaccac 22757490  T
Q  260 ctagaataatcttgtaaccaagagaataatctag 293  Q
    ||||||||||||||||||||| ||||||||||||    
T  22757489 ctagaataatcttgtaaccaaaagaataatctag 22757456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 21609804 - 21609935
Alignment:
Q  161 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttggagtttactctttgtcattaagggtttaaaatatctatattatgtagcaccacc 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| |||||||||||||||||||||||||||    
T  21609804 tgttagaaattaaatcaagaaatatctagaagagtatagaagcttgaagtt-actctttgtcattaagagttaaaaatatctatattatgtagcaccacc 21609902  T
Q  261 tagaataatcttgtaaccaagagaataatctag 293  Q
    |||||||||||||||||||| ||||||||||||    
T  21609903 tagaataatcttgtaaccaaaagaataatctag 21609935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 165
Target Start/End: Complemental strand, 3370761 - 3370625
Alignment:
Q  35 ggtgatcgagtactgtcccactgaagagcaaattgcagatatttttacaaagccattgaagattgagtcattttacaaattgaagaaaatgcttggaatg 134  Q
    ||||||| | || |||||||||||||| |||||| |  ||||||||||||||||  | | ||| || | ||||||||| |||||||| ||||||||||||    
T  3370761 ggtgatcaaatattgtcccactgaagaacaaattacttatatttttacaaagcctctaacgatagaattattttacaagttgaagaagatgcttggaatg 3370662  T
Q  135 a------tgaaagcttgatttaagggaggcaatgtta 165  Q
    |      || ||||||||||||||||||| |||||||    
T  3370661 acaaatttggaagcttgatttaagggaggtaatgtta 3370625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 4129062 - 4129003
Alignment:
Q  76 tttttacaaagccattgaagattgagtcattttacaaattgaagaaaatgcttggaatga 135  Q
    ||||||||||||  ||||| ||||||| |||||||| || ||||||||||||||||||||    
T  4129062 tttttacaaagcagttgaaaattgagttattttacatatcgaagaaaatgcttggaatga 4129003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 4126438 - 4126379
Alignment:
Q  76 tttttacaaagccattgaagattgagtcattttacaaattgaagaaaatgcttggaatga 135  Q
    |||||||||||   ||||| ||||||| |||||||| || ||||||||||||||||||||    
T  4126438 tttttacaaagtagttgaaaattgagttattttacatatcgaagaaaatgcttggaatga 4126379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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