View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7778_low_1 (Length: 435)
Name: NF7778_low_1
Description: NF7778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7778_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 10 - 421
Target Start/End: Complemental strand, 29563876 - 29563465
Alignment:
| Q |
10 |
atggacatcaaatggtctatacgtaacaagtatataatcttggtacacatccatcacaattggtttcgcaaacaatggttttcgacagagcaatgagctt |
109 |
Q |
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| T |
29563876 |
atggacatcaaatggtctatacgtaacaagtatataatcttggtacacatccatcacaattggtttcgcaaacaatggttttcgacagagcaatgagctt |
29563777 |
T |
|
| Q |
110 |
tgatcaaggtgatatcttgggtaaaagagcaattcatacctgagataaataaggagacgtaagagaccattgaatgtagaataaaatgtttcgtatgttg |
209 |
Q |
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| T |
29563776 |
tgatcaaggtgatatcttgggtaaaagagcaattcatacctgagataaataaggagacataagagaccattgaatgtagaataaaatgtttcgtatgttg |
29563677 |
T |
|
| Q |
210 |
cagaatgatacagttaatgttgcaaaaattatagttttaagttcaatctgacctagactttgaaaagcaaaataagtgggtaaaaaactgaacatccttt |
309 |
Q |
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| T |
29563676 |
cagaatgatacagttaatgttgcaaaaattatagttttaagttcaatcagacctagactttgaaaagcaaattaagtgggtaaaaaactgaacatccttt |
29563577 |
T |
|
| Q |
310 |
atatcaggcttttccaggcatgtacattgttaaacaacaatcagctnnnnnnnttatttttgacaaacaatataatttgcaagaaccaaccacatgaaat |
409 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29563576 |
aaatcaggcttttccaggcatgtacattgttaaacaacaatcagctaaaaaaattatttttgacaaacaatataatttgcaagaaccaaccacatgaaat |
29563477 |
T |
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| Q |
410 |
acgtaagcaaat |
421 |
Q |
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|||||||||||| |
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| T |
29563476 |
acgtaagcaaat |
29563465 |
T |
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