View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7778_low_3 (Length: 367)

Name: NF7778_low_3
Description: NF7778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7778_low_3
NF7778_low_3
[»] chr5 (12 HSPs)
chr5 (3-224)||(26032057-26032280)
chr5 (3-140)||(38171529-38171666)
chr5 (3-140)||(38181859-38181996)
chr5 (3-140)||(38189135-38189272)
chr5 (3-140)||(38209085-38209222)
chr5 (3-140)||(38216360-38216497)
chr5 (3-217)||(38446029-38446245)
chr5 (298-353)||(26032354-26032409)
chr5 (306-353)||(21034825-21034872)
chr5 (298-353)||(38445893-38445948)
chr5 (298-353)||(15304445-15304500)
chr5 (298-353)||(18257971-18258026)
[»] chr8 (5 HSPs)
chr8 (299-352)||(33758044-33758097)
chr8 (310-353)||(158890-158933)
chr8 (299-352)||(13515457-13515510)
chr8 (299-352)||(13604990-13605043)
chr8 (314-355)||(22210158-22210199)
[»] chr2 (6 HSPs)
chr2 (300-353)||(12496786-12496839)
chr2 (298-350)||(654168-654220)
chr2 (299-353)||(35665434-35665488)
chr2 (314-355)||(578395-578436)
chr2 (306-355)||(24895657-24895706)
chr2 (300-353)||(30956143-30956196)
[»] chr3 (2 HSPs)
chr3 (300-352)||(1935163-1935215)
chr3 (310-353)||(54394426-54394469)
[»] chr4 (6 HSPs)
chr4 (298-353)||(31792781-31792836)
chr4 (298-355)||(41609240-41609297)
chr4 (306-345)||(4120064-4120103)
chr4 (298-353)||(52132012-52132067)
chr4 (298-353)||(11692250-11692305)
chr4 (315-355)||(41823739-41823779)
[»] chr7 (5 HSPs)
chr7 (299-355)||(25245370-25245426)
chr7 (298-353)||(33004952-33005007)
chr7 (306-353)||(33998687-33998734)
chr7 (299-353)||(30218953-30219007)
chr7 (300-352)||(33237121-33237173)
[»] chr1 (8 HSPs)
chr1 (310-350)||(49457908-49457948)
chr1 (298-353)||(33261902-33261957)
chr1 (298-353)||(33282061-33282116)
chr1 (311-355)||(2058759-2058803)
chr1 (310-353)||(14398107-14398150)
chr1 (191-223)||(362673-362705)
chr1 (193-221)||(1691298-1691326)
chr1 (298-350)||(1691470-1691522)
[»] chr6 (2 HSPs)
chr6 (298-353)||(3014381-3014436)
chr6 (306-353)||(26386303-26386350)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 26032057 - 26032280
Alignment:
Q  3 tttggtggtatgtccgctcgacatttgagagttggtctgagactaatagtgggagcgcaattgtaaatgtttaacggtttcgctaaaaggaagacgagag 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||     
T  26032057 tttggtggtatgtccgctcgacatttgagagttggtctgagactaatagtagtagcgcaattgtaaatgtttaacggtttcgctaaaaggaagacgagac 26032156  T
Q  103 ataaagagtcgaatacatgtgaaagggagaaaatttca-aaaccaagctttatgatagaggcctttattttctttgataa-nnnnnnnnngagttaaata 200  Q
    |||||||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||          ||||||||||    
T  26032157 ataaagagtcgaatacgtgtgaaagggataaaatttcagagaccaagctttatgatagaggcctttattttctttgataattttttttttgagttaaata 26032256  T
Q  201 agtttttcgtccctatagatatag 224  Q
    ||||||||||||||||| ||||||    
T  26032257 agtttttcgtccctataaatatag 26032280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 38171529 - 38171666
Alignment:
Q  3 tttggtggtatgtccgctcgacatttgagagttggtctgagactaatagtgggagcgcaattgtaaatgtttaacggtttcgctaaaaggaagacgagag 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||| ||||||| ||||||||||    
T  38171529 tttggtggtatgtccgctcgacatttgagagttggtctgagactaacagtgggagcacaattgtaaatgtttagcggtttcactaaaagaaagacgagag 38171628  T
Q  103 ataaagagtcgaatacatgtgaaagggagaaaatttca 140  Q
    |||||||||||||||| |||||||| || |||||||||    
T  38171629 ataaagagtcgaatacttgtgaaagagaaaaaatttca 38171666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 38181996 - 38181859
Alignment:
Q  3 tttggtggtatgtccgctcgacatttgagagttggtctgagactaatagtgggagcgcaattgtaaatgtttaacggtttcgctaaaaggaagacgagag 102  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||| |||||||||||||||    
T  38181996 tttggtggtatgtccgttcgacatttgagagttggtctgagactaatagtggtagcacaactgtaaatgtttaacggttttgcttaaaggaagacgagag 38181897  T
Q  103 ataaagagtcgaatacatgtgaaagggagaaaatttca 140  Q
    |||||||||||||||| |||||||| || |||||||||    
T  38181896 ataaagagtcgaatacttgtgaaagagaaaaaatttca 38181859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 38189135 - 38189272
Alignment:
Q  3 tttggtggtatgtccgctcgacatttgagagttggtctgagactaatagtgggagcgcaattgtaaatgtttaacggtttcgctaaaaggaagacgagag 102  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||| |||||||||||||||    
T  38189135 tttggtggtatgtccgttcgacatttgagagttggtctgagactaatagtggtagcacaactgtaaatgtttaacggttttgcttaaaggaagacgagag 38189234  T
Q  103 ataaagagtcgaatacatgtgaaagggagaaaatttca 140  Q
    |||||||||||||||| |||||||| || |||||||||    
T  38189235 ataaagagtcgaatacttgtgaaagagaaaaaatttca 38189272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 38209222 - 38209085
Alignment:
Q  3 tttggtggtatgtccgctcgacatttgagagttggtctgagactaatagtgggagcgcaattgtaaatgtttaacggtttcgctaaaaggaagacgagag 102  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||| |||||||||||||||    
T  38209222 tttggtggtatgtccgttcgacatttgagagttggtctgagactaatagtggtagcacaactgtaaatgtttaacggttttgcttaaaggaagacgagag 38209123  T
Q  103 ataaagagtcgaatacatgtgaaagggagaaaatttca 140  Q
    |||||||||||||||| |||||||| || |||||||||    
T  38209122 ataaagagtcgaatacttgtgaaagagaaaaaatttca 38209085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 38216360 - 38216497
Alignment:
Q  3 tttggtggtatgtccgctcgacatttgagagttggtctgagactaatagtgggagcgcaattgtaaatgtttaacggtttcgctaaaaggaagacgagag 102  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||| |||||||||||||||    
T  38216360 tttggtggtatgtccgttcgacatttgagagttggtctgagactaatagtggtagcacaactgtaaatgtttaacggttttgcttaaaggaagacgagag 38216459  T
Q  103 ataaagagtcgaatacatgtgaaagggagaaaatttca 140  Q
    |||||||||||||||| |||||||| || |||||||||    
T  38216460 ataaagagtcgaatacttgtgaaagagaaaaaatttca 38216497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 38446245 - 38446029
Alignment:
Q  3 tttggtggtatgtccgctcgacatttgagagttggtctgagactaatagtgggagcgcaattgtaaat-gtttaacggtttcgctaaaaggaagacgaga 101  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| ||||| |  |||||||||||||| ||||| |||||||||    
T  38446245 tttggtggtatgtacgctcgacatttgagagttggtctgagaccaatagtgggagcacaaatgtaactattttaacggtttcgccaaaagtaagacgaga 38446146  T
Q  102 gataaagagtcgaatacatgtgaaagggagaaaatttca-aaaccaagctttatgatagaggcctttattttctttgataannnnnnnnngagttaaata 200  Q
    ||||| |||||| |||| |||||||| ||||||| |||| |  |||| ||||| ||  |||| ||||||||||||||||||         | ||||||||    
T  38446145 gataaggagtcggatacgtgtgaaagagagaaaaattcagattccaaactttaagacggaggtctttattttctttgataaatttttttggggttaaata 38446046  T
Q  201 agtttttcgtccctata 217  Q
    |||||||| ||||||||    
T  38446045 agtttttcatccctata 38446029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 26032354 - 26032409
Alignment:
Q  298 ggtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26032354 ggtccttgatgaccactttatgttcatgtgaatgtcaagattataactcttttatg 26032409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 21034872 - 21034825
Alignment:
Q  306 atggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21034872 atggccactttatgttcatgtgaatgtcaagattataactcttttatg 21034825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 38445948 - 38445893
Alignment:
Q  298 ggtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  38445948 ggtccttaatggccactttatgttcatgtgaatgtcaagattataaatcttttatg 38445893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 15304445 - 15304500
Alignment:
Q  298 ggtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  15304445 ggtccttaatggccactttatgttcatgtgaatatcaagattataactcttatatg 15304500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 18258026 - 18257971
Alignment:
Q  298 ggtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||  |||||||    
T  18258026 ggtccttgatagccattttatgttcatgtgaatgtcaagattataaccattttatg 18257971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 33758097 - 33758044
Alignment:
Q  299 gtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttat 352  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  33758097 gtccttaatggccactttatgttcatgtgaatgtcaagattataactctattat 33758044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 158933 - 158890
Alignment:
Q  310 ccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    |||||||||||| |||||||| ||||||||||||||||||||||    
T  158933 ccactttatgttaatgtgaatttcaagattataactcttttatg 158890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 13515457 - 13515510
Alignment:
Q  299 gtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttat 352  Q
    |||||| || |||||||||||||||| ||||||||||| |||||||||| ||||    
T  13515457 gtccttaatagccactttatgttcatatgaatgtcaagtttataactctattat 13515510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 13604990 - 13605043
Alignment:
Q  299 gtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttat 352  Q
    |||||| || |||||||||||||||| ||||||||||| |||||||||| ||||    
T  13604990 gtccttaatagccactttatgttcatatgaatgtcaagtttataactctattat 13605043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 355
Target Start/End: Complemental strand, 22210199 - 22210158
Alignment:
Q  314 tttatgttcatgtgaatgtcaagattataactcttttatgat 355  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  22210199 tttatgttcatatgaatgtcaagattataacacttttatgat 22210158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 12496839 - 12496786
Alignment:
Q  300 tccttgatggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    ||||| |||| |||||||||||||||||||||||||||||||||| ||||||||    
T  12496839 tccttaatgggcactttatgttcatgtgaatgtcaagattataacacttttatg 12496786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 654220 - 654168
Alignment:
Q  298 ggtccttgatggccactttatgttcatgtgaatgtcaagattataactctttt 350  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||| |||||    
T  654220 ggtcattgatagccactttatgttcatgtgaatgtcaagattataacactttt 654168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 35665434 - 35665488
Alignment:
Q  299 gtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    |||||| ||| ||||||||||||  ||||||||||||||||||||| ||||||||    
T  35665434 gtccttaatgaccactttatgttattgtgaatgtcaagattataacacttttatg 35665488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 355
Target Start/End: Complemental strand, 578436 - 578395
Alignment:
Q  314 tttatgttcatgtgaatgtcaagattataactcttttatgat 355  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  578436 tttatgttcatatgaatatcaagattataactcttttatgat 578395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 24895706 - 24895657
Alignment:
Q  306 atggccactttatgttcatgtgaatgtcaagattataactcttttatgat 355  Q
    ||||||| ||||| ||||| | ||||||||||||||||||||||||||||    
T  24895706 atggccaatttatattcatataaatgtcaagattataactcttttatgat 24895657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 30956143 - 30956196
Alignment:
Q  300 tccttgatggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    ||||| || |||| |||| |||||| | ||||||||||||||||||||||||||    
T  30956143 tccttaattgccaatttaggttcatataaatgtcaagattataactcttttatg 30956196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 1935163 - 1935215
Alignment:
Q  300 tccttgatggccactttatgttcatgtgaatgtcaagattataactcttttat 352  Q
    ||||| || |||||||||||||||||||||||||||||||||||| |||||||    
T  1935163 tccttaattgccactttatgttcatgtgaatgtcaagattataacacttttat 1935215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 353
Target Start/End: Original strand, 54394426 - 54394469
Alignment:
Q  310 ccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||    
T  54394426 ccactttatgttcatgtgaacgtcaaaattataacttttttatg 54394469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 31792836 - 31792781
Alignment:
Q  298 ggtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    ||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  31792836 ggtccttaatgaccagtttatgtttatgtgaatgtcaagattataactcttttatg 31792781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 41609297 - 41609240
Alignment:
Q  298 ggtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttatgat 355  Q
    ||||||| ||||| | ||||||||||| | ||||||||||||||||||||||||||||    
T  41609297 ggtccttaatggctaatttatgttcatataaatgtcaagattataactcttttatgat 41609240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 345
Target Start/End: Complemental strand, 4120103 - 4120064
Alignment:
Q  306 atggccactttatgttcatgtgaatgtcaagattataact 345  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  4120103 atggccactttatgttcatgtaaatgtcaagattataact 4120064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 52132012 - 52132067
Alignment:
Q  298 ggtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    ||||||| || | ||||||||||||||||||||||||| ||||||||| |||||||    
T  52132012 ggtccttaatagtcactttatgttcatgtgaatgtcaaaattataacttttttatg 52132067  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 11692250 - 11692305
Alignment:
Q  298 ggtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    ||||||| ||| |||| |||||||||||||| |||||||||| |||| ||||||||    
T  11692250 ggtccttaatgaccacattatgttcatgtgagtgtcaagattgtaacacttttatg 11692305  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 355
Target Start/End: Complemental strand, 41823779 - 41823739
Alignment:
Q  315 ttatgttcatgtgaatgtcaagattataactcttttatgat 355  Q
    |||||||||| ||||| ||||||||||||| ||||||||||    
T  41823779 ttatgttcatatgaatctcaagattataacacttttatgat 41823739  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 25245426 - 25245370
Alignment:
Q  299 gtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttatgat 355  Q
    |||||| ||||||  ||||||||||| | ||||||||||||||||||||||||||||    
T  25245426 gtccttaatggcctatttatgttcatataaatgtcaagattataactcttttatgat 25245370  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 33004952 - 33005007
Alignment:
Q  298 ggtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    ||||||| ||||||||||||| |||||||||||||||| ||| ||||| |||||||    
T  33004952 ggtccttaatggccactttattttcatgtgaatgtcaaaattgtaactattttatg 33005007  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 33998687 - 33998734
Alignment:
Q  306 atggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    |||| |||||||||||||| |||||||||||||||||||| |||||||    
T  33998687 atggtcactttatgttcatatgaatgtcaagattataacttttttatg 33998734  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 30219007 - 30218953
Alignment:
Q  299 gtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    |||||| ||||||| ||||| ||||| | |||||||| |||||||||||||||||    
T  30219007 gtccttaatggccattttattttcatataaatgtcaaaattataactcttttatg 30218953  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 33237173 - 33237121
Alignment:
Q  300 tccttgatggccactttatgttcatgtgaatgtcaagattataactcttttat 352  Q
    ||||| ||| ||| ||||| ||||| |||||||||||||| ||||||||||||    
T  33237173 tccttaatgaccaatttatattcatatgaatgtcaagattgtaactcttttat 33237121  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 49457948 - 49457908
Alignment:
Q  310 ccactttatgttcatgtgaatgtcaagattataactctttt 350  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  49457948 ccactttatgttgatgtgaatgtcaagattataactctttt 49457908  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 33261957 - 33261902
Alignment:
Q  298 ggtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    ||||||| ||| ||||||||||||||||||||||| || ||||||||| |||||||    
T  33261957 ggtccttaatgaccactttatgttcatgtgaatgtaaaaattataacttttttatg 33261902  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 33282116 - 33282061
Alignment:
Q  298 ggtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    ||||||| ||| ||||||||||||||||||||||| || ||||||||| |||||||    
T  33282116 ggtccttaatgaccactttatgttcatgtgaatgtaaaaattataacttttttatg 33282061  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 2058803 - 2058759
Alignment:
Q  311 cactttatgttcatgtgaatgtcaagattataactcttttatgat 355  Q
    |||||||||||||||||||| | |||||| |||||||||||||||    
T  2058803 cactttatgttcatgtgaatattaagattgtaactcttttatgat 2058759  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 353
Target Start/End: Original strand, 14398107 - 14398150
Alignment:
Q  310 ccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    ||||||||||||||| |||||||| ||||||||| |||||||||    
T  14398107 ccactttatgttcatatgaatgtcgagattataattcttttatg 14398150  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 362673 - 362705
Alignment:
Q  191 gagttaaataagtttttcgtccctatagatata 223  Q
    ||||||||||||||||||||||||||| |||||    
T  362673 gagttaaataagtttttcgtccctataaatata 362705  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 1691298 - 1691326
Alignment:
Q  193 gttaaataagtttttcgtccctatagata 221  Q
    |||||||||||||||||||||||||||||    
T  1691298 gttaaataagtttttcgtccctatagata 1691326  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 1691522 - 1691470
Alignment:
Q  298 ggtccttgatggccactttatgttcatgtgaatgtcaagattataactctttt 350  Q
    ||||||| ||| ||||||||||||||||||||||| || ||| |||| |||||    
T  1691522 ggtccttaatgaccactttatgttcatgtgaatgtaaaaattctaacactttt 1691470  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 3014381 - 3014436
Alignment:
Q  298 ggtccttgatggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    ||||||| ||||||| ||||| ||||| | ||| ||||||||||||||||||||||    
T  3014381 ggtccttaatggccaatttatattcatataaatatcaagattataactcttttatg 3014436  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 26386303 - 26386350
Alignment:
Q  306 atggccactttatgttcatgtgaatgtcaagattataactcttttatg 353  Q
    |||| |||||||| || |||||||||||||| ||||||||||||||||    
T  26386303 atggtcactttatatttatgtgaatgtcaaggttataactcttttatg 26386350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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