View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7778_low_4 (Length: 365)
Name: NF7778_low_4
Description: NF7778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7778_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 129 - 346
Target Start/End: Original strand, 1560685 - 1560901
Alignment:
| Q |
129 |
cttgaccttaacctttaattggaaactagaccgacacccaaccactaataagttccaatggcttctcctgaaaggattccacggggccgtgacataagtg |
228 |
Q |
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| T |
1560685 |
cttgaccttaacctttaattggaaactagaccgacacccaaccactaataagttccaatggcttctcccgaaaggattccacgga-ccatgacataagtg |
1560783 |
T |
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| Q |
229 |
cgaacgaacctaaggagaaacgccaaagaaacgcataacacagagcaaagatgaacaaccaacaagatatgtggcacatgaacacacaaactaaaggtga |
328 |
Q |
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| T |
1560784 |
cgaacgaacctaaggagaaacaccaaagaagcccataacacagagcaaagatgaacaaccaacaagttatgtgccacatgaacacacagactaaaggtga |
1560883 |
T |
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| Q |
329 |
acatccaacatggtccat |
346 |
Q |
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| T |
1560884 |
acatccaacatggtccat |
1560901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 1560571 - 1560650
Alignment:
| Q |
15 |
tggggtaaactcatgtgactaacgtccttctcaatgcatgttttccactacttttcaatcaagactttaacaaatacatg |
94 |
Q |
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| T |
1560571 |
tggggtaaactcatgtgactaacgtccttctcaatgcatgttttccactacttttccatcaagactttaacaaatacatg |
1560650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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