View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7779_high_1 (Length: 717)
Name: NF7779_high_1
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 674; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 19 - 704
Target Start/End: Complemental strand, 35254263 - 35253578
Alignment:
| Q |
19 |
cggaccgtccagtcgcacattagccggtgtgctagattctttgaggaaaactacccctcaaataattctggaaggatattctattcaagagcttgcatgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35254263 |
cggaccgtccagtcgcacattagccggtgtgctagattctttgaggaaaactacccctcaaataattctggaaggacattctattcaagagcttgcatgt |
35254164 |
T |
|
| Q |
119 |
aaatttatattctatacatcgttggcatcacaattctgtcatttcatatacttcacatgatatttgttagttgtgaaatttagatgacaattaaggaaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35254163 |
aaatttatattctatacatcgttggcatcacaattctgtcatttcatatacttcacatgatatttgttagttgtgaaatttagatgacaattaaggaaat |
35254064 |
T |
|
| Q |
219 |
ttagttgattaaatgtttatttttatttctaacacaaggtatttcaagcggtcaaagtcttttgtcctgcgatttatcatcggatggaaagattgtagca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35254063 |
ttagttgattaaatgtttatttttatttctaacacaaggtatttcaagcggtcaaagtcttttgtcctgcgatttatcatcggatggaaagattgtagca |
35253964 |
T |
|
| Q |
319 |
agtggtgggattgggaagaaggtgaataatctatatgataaatttttcaaatccatttgtttgttgtaactttgtctatccaatgtatttatccttcctt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35253963 |
agtggtgggattgggaagaaggtgaataatctatatgataaatttttcaaatccatttgtttgttgtcactttgtctatccaatgtatttatccttcctt |
35253864 |
T |
|
| Q |
419 |
atattgtggtttatatagcctttcatttgctacctggaaactggtctttctgttacggcattggagtcacatttagataccatcttcgaagttagatttc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35253863 |
atattgtggtttatatagcctttcatttgctacctggaaactggtctttctgttacggcattggagtcacatttagataccatcttcgaagttagatttc |
35253764 |
T |
|
| Q |
519 |
aaccaggatcaactgtgtttgcaacgtcttctgctgataaaacagtaaaattatgggatgcaaacagtgtgagtctctttcttttcacatctccttctac |
618 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35253763 |
aaccaggatcaactgtgtttgcaacctcttctgctgataaaacagtaaaattatgggatgcaaacagtgtgagtctctttcttttcacatctccttctac |
35253664 |
T |
|
| Q |
619 |
tcactcatctgcattattccttcctatgtaacttatggattaattcattatttgtatatgtatagcccgagagatcattttgcaat |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35253663 |
tcactcatctgcattattccttcctatgtaacttatggattaattcattatttgtatatgtatagcccgagagatcattttgcaat |
35253578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 69 - 643
Target Start/End: Complemental strand, 35278769 - 35278199
Alignment:
| Q |
69 |
ctacccctcaaataattctggaaggatattctattcaagagc-ttgcatgtaaatttatattctatacatcgttggcatcacaattctgtcatttcatat |
167 |
Q |
| |
|
|||||| ||||||||||| ||| || |||||||||||| ||| || || |||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35278769 |
ctacccgtcaaataattcaggatgggtattctattcaa-agcattacaagtaaatttctattctatacatctttggcatcacaattctgtcatttcatat |
35278671 |
T |
|
| Q |
168 |
acttcacatgatatttgttagtt----gtgaaatttagatgacaattaaggaaatttagttgattaaatgtttatttttatttctaacacaaggtatttc |
263 |
Q |
| |
|
|||||||| | ||||||||| ||||| || ||||||||| ||||||||||||||||||| | ||||||||||||||||| ||||||||| || | |
|
|
| T |
35278670 |
acttcacaatttttttgttagtatctagtgaatttgagatgacaaataaggaaatttagttgattcactgtttatttttatttcttacacaaggttttcc |
35278571 |
T |
|
| Q |
264 |
aagcggtcaaagtcttttgtcctgcgatttatcatcggatggaaagattgtagcaagtggtgggattgggaagaaggtgaataatctatatgataaattt |
363 |
Q |
| |
|
||||||||| | |||| |||||||||||| ||||| |||||||||||||||||||| ||||||| | |||||||||||||| || ||||||||| |
|
|
| T |
35278570 |
aagcggtcagacactttcgtcctgcgatttttcatcagatggaaagattgtagcaagcggtgggaacagcgggaaggtgaataatcaatgcgataaattt |
35278471 |
T |
|
| Q |
364 |
ttcaaatccatttgtttgttgtaactttgtctatccaatgtatttatccttccttatattgtggtttatatagcctttcatttgctacctggaaactggt |
463 |
Q |
| |
|
| ||| ||||| | ||| | || || || || |||||||| || ||||||||||||||| |||||||||||||| || |||| ||| | |
|
|
| T |
35278470 |
tccaattccatctttttatggtc----tgcataattaacatatttatcttt----atattgtggtttatacagcctttcatttgcaacatggatacttct |
35278379 |
T |
|
| Q |
464 |
ctttctgttacggcattggagtcacatttagataccatcttcgaagttagatttcaaccaggatcaactgtgtttgcaacgtcttctgctgataaaacag |
563 |
Q |
| |
|
||||||||| || | |||||||||| | ||||||||| || |||||||||||||||||||| ||| | |||||||| |||||||||||||||||| |
|
|
| T |
35278378 |
acttctgttactgcctcagagtcacattcatctaccatcttagatgttagatttcaaccaggatccactatatttgcaacatcttctgctgataaaacaa |
35278279 |
T |
|
| Q |
564 |
taaaattatgggatgcaaacagtgtgagtctctttcttttcacatctccttctactcactcatctgcattattccttcct |
643 |
Q |
| |
|
||||||| |||||||| || | ||||||||||||||||||| | | | |||||||||||| |||||||| |||||||| |
|
|
| T |
35278278 |
taaaattctgggatgctaaaacggtgagtctctttcttttcataccccattctactcactctgctgcattagtccttcct |
35278199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 200 - 669
Target Start/End: Complemental strand, 35271956 - 35271489
Alignment:
| Q |
200 |
agatgacaattaaggaaatttagttgattaaatgtttatttttatttctaacacaaggtatttcaagcggtcaaagtcttttgtcctgcgatttatcatc |
299 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||||| |||| | |||| ||| |||||| || ||||||||| | ||||||||||| ||||| ||||| |
|
|
| T |
35271956 |
agatgacaattaaggacatttaattgattcaatgtctattctaattttaaactcaaggttttcaaagcggtcagaagcttttgtcctgtgatttttcatc |
35271857 |
T |
|
| Q |
300 |
ggatggaaagattgtagcaagtggtgggattgggaagaaggtgaataatctatatgataaatttttcaaatccatttgtttgttgtaactttgtctatcc |
399 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| |||||||||| || ||||||||| ||| || |||||||| | || |||| | |
|
|
| T |
35271856 |
agatggaaagattgttgcaagtggtggacttgggaagcaggtgaataaataatgcaataaattttccaattcaatttgtttaccctcacgttgtg----c |
35271761 |
T |
|
| Q |
400 |
aatgtatttatccttccttatattgtggtttatatagcctttcatttgctacctggaaactggtctttctgttacggcattggagtcacatttagatacc |
499 |
Q |
| |
|
|||||| | |||||| ||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||| ||| ||| ||||||||||| || |
|
|
| T |
35271760 |
aatgtactgatcctt----atattgtggtttaaatagcctttcatttgctacatggaaactggtaattcttttacaacatcagagacacatttagatgcc |
35271665 |
T |
|
| Q |
500 |
atcttcgaagttagatttcaaccaggatcaactgtgtttgcaacgtcttctgctgataaaacagtaaaattatgggatgcaaa------cagtgtgagtc |
593 |
Q |
| |
|
||||| ||||| ||||||| | |||||||| || | |||||||| ||||||||||||| |||||||||| ||||| | ||||| || || ||| |
|
|
| T |
35271664 |
atcttagaagtcagatttcgatcaggatcacctatatttgcaacttcttctgctgatagaacagtaaaactatggcacgcaaaaagaacaagagtaagtt |
35271565 |
T |
|
| Q |
594 |
tctttcttttcacatctccttctactcactcatctgcattattccttcctatgtaacttatggattaattcattat |
669 |
Q |
| |
|
||||||||||| | |||||||||||||||| |||||| || || ||||| ||||||| ||||||||||||||||| |
|
|
| T |
35271564 |
tctttcttttcttagctccttctactcactcttctgcaatagtctttcctttgtaactcatggattaattcattat |
35271489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 483 - 669
Target Start/End: Complemental strand, 35241568 - 35241382
Alignment:
| Q |
483 |
agtcacatttagataccatcttcgaagttagatttcaaccaggatcaactgtgtttgcaacgtcttctgctgataaaacagtaaaattatgggatgcaaa |
582 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||||||||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35241568 |
agtcacattcatctaccatcttagaagttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcaaa |
35241469 |
T |
|
| Q |
583 |
cagtgtgagtctctttcttttcacatctccttctactcactcatctgcattattccttcctatgtaacttatggattaattcattat |
669 |
Q |
| |
|
| ||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||| |||||||| ||||| ||||||||| |
|
|
| T |
35241468 |
aaaagtgagtctctttcttttcatatccccttctactcactcttctgcattagtccttccattgtaacttgaggattgattcattat |
35241382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 484 - 652
Target Start/End: Complemental strand, 35287400 - 35287230
Alignment:
| Q |
484 |
gtcacatttagataccatcttcgaagttagatttcaaccaggatcaactgtgtttgcaacgtcttctgctgataaaacagtaaaattatgggatgcaaac |
583 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||| ||||||| |||||| | |||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35287400 |
gtcacatttatctactatcttcgatgttagatttaaaccaggttcaactatatttgcaacatcctctgctgataaaacagtaaaattatgggatgcaaaa |
35287301 |
T |
|
| Q |
584 |
agtgtgagtctctttc-ttttcacat-ctccttctactcactcatctgcattattccttcctatgtaactt |
652 |
Q |
| |
|
| ||||||||||||| ||||||||| | |||||||||||||| ||||||||| |||||||| |||||||| |
|
|
| T |
35287300 |
aaagtgagtctctttctttttcacatcccccttctactcactcttctgcattagtccttcctttgtaactt |
35287230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 230 - 582
Target Start/End: Complemental strand, 35247454 - 35247080
Alignment:
| Q |
230 |
aatgtttatttttatttctaacacaaggtatttcaagcggtcaaagtcttttgtcctgcgatttatcatcggatggaaagattgtagcaagtggtgggat |
329 |
Q |
| |
|
||||||||||||||||||| ||||||||| || |||| ||| | ||| ||||||||||||| ||||| |||||||||||| |||||||||||||||| |
|
|
| T |
35247454 |
aatgtttatttttatttcttacacaaggttttctaagcaatcagaagcttatgtcctgcgatttttcatctgatggaaagattatagcaagtggtgggat |
35247355 |
T |
|
| Q |
330 |
tggg------------aa------gaaggtgaataatctatatgataaatttttcaaatccatttgtttgttgtaacttt--------gtctatccaatg |
403 |
Q |
| |
|
|||| || |||||||||||||| || |||||||||| | ||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
35247354 |
tggggcaagtgatgagaatggggcgaaggtgaataatcaatgcgataaattttccgcttccatttgtttactgtcactttttctatgtgtctatccaatg |
35247255 |
T |
|
| Q |
404 |
tatttatccttccttatattgtggtttatatagcctttcatttgctacctggaaactggtctttctgttacggcattggagtcacatttagataccatct |
503 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||| |||||| | || ||||||||| ||||| |||||| ||||||||| ||||| |
|
|
| T |
35247254 |
tatttatccat----atattgtggtttatatagcctttcatttgctacgtggaaagtcgtgcttctgttactgcattagagtcagatttagatatcatct |
35247159 |
T |
|
| Q |
504 |
tcgaagttagatttcaaccaggatcaactgtgtttgcaacgtcttctgctgataaaacagtaaaattatgggatgcaaa |
582 |
Q |
| |
|
| |||||||||||||||||| ||||||| |||||||| ||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
35247158 |
tagaagttagatttcaaccaaaatcaactagatttgcaacaacttctcgtgatggaacagtaaaactatgggatgcaaa |
35247080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 417 - 601
Target Start/End: Complemental strand, 35283923 - 35283739
Alignment:
| Q |
417 |
ttatattgtggtttatatagcctttcatttgctacctggaaactggtctttctgttacggcattggagtcacatttagataccatcttcgaagttagatt |
516 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || |||||| | | ||||||||| | | |||||||||| ||||||||| || || ||||| |
|
|
| T |
35283923 |
ttatattgtggttaatatagcctttcatttgcaacgtggaaagtcttgattctgttactacgtcagagtcacattcgtctaccatctttgacgtgagatt |
35283824 |
T |
|
| Q |
517 |
tcaaccaggatcaactgtgtttgcaacgtcttctgctgataaaacagtaaaattatgggatgcaaacagtgtgagtctctttctt |
601 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
35283823 |
tcaaccaggatcaactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcaaaaaaagtgagtctctttctt |
35283739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 70 - 328
Target Start/End: Complemental strand, 35241990 - 35241724
Alignment:
| Q |
70 |
tacccctcaaataattctggaaggatattctattcaagagcttgcatgtaaatttatattctatacatcgttggcatcacaattctgtcatttcatatac |
169 |
Q |
| |
|
|||||||||||| |||| ||| ||||||||||||||| | || | |||||||| |||||| | |||| ||||||||||||||||||||||| |||||| |
|
|
| T |
35241990 |
tacccctcaaatgattcgggatggatattctattcaacactttataagtaaatttctattctttgcatctttggcatcacaattctgtcattt-atatac |
35241892 |
T |
|
| Q |
170 |
ttcaca------tgatatttgtt--agttgtgaaatttagatgacaattaaggaaatttagttgattaaatgtttatttttatttctaaca-caaggtat |
260 |
Q |
| |
|
|||||| || || | | | |||| | || || | |||||||| | |||||||||||||||| |||||||||||||||||||||| |||||| | |
|
|
| T |
35241891 |
ttcacaaaatcttgttagtagcttcagttatcaatttgaaatgacaatgatggaaatttagttgattcgatgtttatttttatttctaacaccaaggttt |
35241792 |
T |
|
| Q |
261 |
ttcaagcggtcaaagtcttttgtcctgcgatttatcatcggatggaaagattgtagcaagtggtggga |
328 |
Q |
| |
|
| |||| |||||| ||||||||||| ||||| |||||||||||||| ||| |||||||| |||||| |
|
|
| T |
35241791 |
tacaagtagtcaaaagcttttgtcctgtgatttttcatcggatggaaatattctagcaagttgtggga |
35241724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 35247627 - 35247522
Alignment:
| Q |
70 |
tacccctcaaataattctggaaggatattctattcaagagcttgcatgtaaatttatattctatacatcgttggcatcacaattctgtcatttcatatac |
169 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||| | | |||| |||| ||| |||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
35247627 |
tacccctcaaataattcgggataaatattctattcaacaccatgcaagtaagtttctattctttacatcgttggcatcacaattctgtcatttcataaac |
35247528 |
T |
|
| Q |
170 |
ttcaca |
175 |
Q |
| |
|
|||||| |
|
|
| T |
35247527 |
ttcaca |
35247522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 428 - 551
Target Start/End: Complemental strand, 35275728 - 35275605
Alignment:
| Q |
428 |
tttatatagcctttcatttgctacctggaaactggtctttctgttacggcattggagtcacatttagataccatcttcgaagttagatttcaaccaggat |
527 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||| ||||||||| || | |||| ||||| |||| ||||||| ||| ||||||||||||||| || |
|
|
| T |
35275728 |
tttatatagcctttcatttgctacatggaaattggtaattctgttacttcaatagagtaacattcagatgccatcttagaatttagatttcaaccagcat |
35275629 |
T |
|
| Q |
528 |
caactgtgtttgcaacgtcttctg |
551 |
Q |
| |
|
|| || | |||||||| ||||||| |
|
|
| T |
35275628 |
cacctatatttgcaacttcttctg |
35275605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 506 - 605
Target Start/End: Complemental strand, 35238456 - 35238355
Alignment:
| Q |
506 |
gaagttagatttcaaccaggatcaactgtgtttgcaacgtcttctgctgataaaacagtaaaattatgggatgcaaac--agtgtgagtctctttctttt |
603 |
Q |
| |
|
||||||||||||||||||||| ||| | | |||||||| ||||| |||||||| ||||||||||||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
35238456 |
gaagttagatttcaaccaggaacaaatatatttgcaacttcttcctctgataaagcagtaaaattatgggattcaaacaaagtaagagtctctttctttt |
35238357 |
T |
|
| Q |
604 |
ca |
605 |
Q |
| |
|
|| |
|
|
| T |
35238356 |
ca |
35238355 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 277 - 327
Target Start/End: Complemental strand, 35284082 - 35284032
Alignment:
| Q |
277 |
cttttgtcctgcgatttatcatcggatggaaagattgtagcaagtggtggg |
327 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
35284082 |
cttttgtcctgcgatttttcatcagatggaaagattgtagcaagtggtggg |
35284032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 35238676 - 35238611
Alignment:
| Q |
284 |
cctgcgatttatcatcggatggaaagattgtagcaagtggtgggattgggaagaaggtgaataatc |
349 |
Q |
| |
|
|||||||||| || || ||||||||| || | ||||||| |||| |||||| |||||||||||||| |
|
|
| T |
35238676 |
cctgcgatttttcgtctgatggaaaggttttggcaagtgctgggtttgggaggaaggtgaataatc |
35238611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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