View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_high_12 (Length: 427)
Name: NF7779_high_12
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 9439420 - 9439508
Alignment:
| Q |
33 |
gacatgctgagagagccatgaatgagatctacacaaggataatttaatgaaggttcacctgaaaagaattttagaccagatattccctc |
121 |
Q |
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| T |
9439420 |
gacatgctgatagagccatgaatgagatctatacaatgagaatttgatgaaggttcgcctgaaaagaattttagaccagatattccctc |
9439508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 305
Target Start/End: Original strand, 9439522 - 9439651
Alignment:
| Q |
176 |
aagaattatgagaagaaagtgggagagaggaagatgatctgttacattagatttaaggataaaaagtggtgtctctgactctgaagagtaacctctggtt |
275 |
Q |
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| T |
9439522 |
aagaattatatgaagaaagtgggagagtggaagaggatctatcctaatggatttaaggatagaaaatgttgtatctgactctgcagagtaacctctggtt |
9439621 |
T |
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| Q |
276 |
ttctcattccatttggttactatccaaata |
305 |
Q |
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| T |
9439622 |
ttcttctaccttttgcttactatccaaata |
9439651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 390 - 427
Target Start/End: Original strand, 9420025 - 9420062
Alignment:
| Q |
390 |
tcatgtgtccaaaaaagaagatacgagtctaactcaat |
427 |
Q |
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| T |
9420025 |
tcatgtgtccaaaaaagaagatatgagtctatctcaat |
9420062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 390 - 427
Target Start/End: Original strand, 9432187 - 9432224
Alignment:
| Q |
390 |
tcatgtgtccaaaaaagaagatacgagtctaactcaat |
427 |
Q |
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| T |
9432187 |
tcatgtgtccaaaaaagaagatatgagtctatctcaat |
9432224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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