View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7779_high_13 (Length: 421)
Name: NF7779_high_13
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 12 - 405
Target Start/End: Complemental strand, 9567968 - 9567575
Alignment:
| Q |
12 |
atcatcagggagtgcaatttataaagccttgaaatgtgaagaaccaacaagcatagagttgataagtgctatgcacattttgtatcagatttgcccatat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9567968 |
atcatcagggagtgcaatttataaagccttgaaatgtgaagaaccaacaagcatagagttgatgagtgctatgcacattttgtatcagatttgcccatat |
9567869 |
T |
|
| Q |
112 |
tttcagtttgcttatatatcatccaatgctgtcatttgtgaagaaatgaaaaatgaatcaagaattcacataattgacttccaaattgcacaaggatcac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9567868 |
tttcagtttgcttatatatcatccaatgctgtcatttgtgaagaaatgcaaaatgaatcaagaattcacataattgacttccaaattgcacaaggatcac |
9567769 |
T |
|
| Q |
212 |
agtggatgttacttttgcatgctctcaagcataaacccggcggacctccgttcattcgtgtaacaggtatcgatgactcgcaatcgtttcatgctagagg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9567768 |
agtggatgttacttttgcatgctctcaagcataaacccggcggacctccgttcattcgtgtaacaggtatcgatgactcgcaatcgtttcatgctagagg |
9567669 |
T |
|
| Q |
312 |
tggaaaacttgatattgtaggaaaaaagctagaagattgtgcaaaaacttgtaaagttccatttgagttcaatagtgttaaaatgtatggatgt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9567668 |
tggaaaacttgatattgtaggaaaaaagctagaagattgtgcaaaaacttgtaaagttccatttgagttcaatagtgttaaaatgtatggatgt |
9567575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 55913786 - 55913614
Alignment:
| Q |
40 |
ttgaaatgtgaagaaccaacaagcatagagttgataagtgctatgcacattttgtatcagatttgcccatattttcagtttgcttatatatcatccaatg |
139 |
Q |
| |
|
|||||||||||| ||||||| |||| |||| | || | | |||||||| ||||||||||||| ||||||||| ||||||| || ||||| | |||| |
|
|
| T |
55913786 |
ttgaaatgtgaacaaccaacgagcaaagagctaatgacttacatgcacatgctgtatcagatttgtccatattttaagtttgcatacatatctgcaaatg |
55913687 |
T |
|
| Q |
140 |
ctgtcatttgtgaagaaatgaaaaatgaatcaagaattcacataattgacttccaaattgcacaaggatcaca |
212 |
Q |
| |
|
|||| |||| ||||| |||| ||||||||| || ||||| |||||||| |||||||| ||||| ||| |||| |
|
|
| T |
55913686 |
ctgttatttctgaagcaatggcaaatgaatccaggattcatataattgatttccaaatcgcacagggaacaca |
55913614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University