View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7779_high_15 (Length: 357)

Name: NF7779_high_15
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7779_high_15
NF7779_high_15
[»] chr7 (23 HSPs)
chr7 (5-335)||(9872611-9872941)
chr7 (218-255)||(3241394-3241431)
chr7 (222-255)||(17989103-17989136)
chr7 (202-255)||(30496641-30496694)
chr7 (223-335)||(44151481-44151592)
chr7 (218-257)||(2999144-2999183)
chr7 (204-255)||(28165030-28165081)
chr7 (204-255)||(45593799-45593850)
chr7 (221-255)||(5006589-5006623)
chr7 (220-286)||(9527140-9527205)
chr7 (269-335)||(24363602-24363668)
chr7 (209-255)||(39591547-39591593)
chr7 (218-251)||(753288-753321)
chr7 (202-287)||(1417201-1417285)
chr7 (204-245)||(5373164-5373205)
chr7 (218-287)||(47004040-47004108)
chr7 (211-288)||(47046156-47046232)
chr7 (203-248)||(49060478-49060523)
chr7 (208-248)||(992013-992053)
chr7 (204-256)||(31341133-31341185)
chr7 (202-250)||(35808989-35809037)
chr7 (236-332)||(44821930-44822025)
chr7 (263-335)||(46104568-46104640)
[»] chr5 (24 HSPs)
chr5 (204-255)||(29117010-29117061)
chr5 (218-288)||(2568610-2568680)
chr5 (205-255)||(985573-985623)
chr5 (218-335)||(15074750-15074864)
chr5 (218-288)||(14295459-14295528)
chr5 (204-334)||(18704038-18704166)
chr5 (218-335)||(35960367-35960482)
chr5 (226-335)||(18543198-18543306)
chr5 (218-255)||(28586846-28586883)
chr5 (202-255)||(35135742-35135795)
chr5 (222-286)||(39823171-39823234)
chr5 (204-244)||(40048371-40048411)
chr5 (202-248)||(912736-912782)
chr5 (204-254)||(10280657-10280707)
chr5 (214-248)||(32969204-32969238)
chr5 (204-249)||(7096213-7096258)
chr5 (218-255)||(10303754-10303791)
chr5 (218-255)||(37063154-37063191)
chr5 (204-255)||(12521490-12521539)
chr5 (215-255)||(12595820-12595860)
chr5 (219-255)||(30585630-30585666)
chr5 (223-255)||(31687993-31688025)
chr5 (220-256)||(31694473-31694509)
chr5 (218-254)||(35095864-35095900)
[»] chr4 (25 HSPs)
chr4 (208-329)||(49219082-49219202)
chr4 (218-261)||(20105907-20105950)
chr4 (204-287)||(30207620-30207701)
chr4 (219-333)||(11802488-11802601)
chr4 (218-332)||(17884021-17884134)
chr4 (208-255)||(54327529-54327576)
chr4 (204-254)||(2169967-2170017)
chr4 (202-250)||(51044544-51044592)
chr4 (221-256)||(3662304-3662339)
chr4 (204-255)||(5131312-5131363)
chr4 (236-335)||(7694011-7694109)
chr4 (218-289)||(24443991-24444061)
chr4 (201-256)||(52645828-52645883)
chr4 (165-249)||(19422312-19422402)
chr4 (222-288)||(43372017-43372082)
chr4 (218-256)||(52926181-52926219)
chr4 (218-255)||(20936082-20936119)
chr4 (218-255)||(23815323-23815360)
chr4 (218-255)||(24929446-24929483)
chr4 (204-241)||(24936249-24936286)
chr4 (223-336)||(52746840-52746952)
chr4 (218-255)||(54325117-54325154)
chr4 (222-287)||(55870390-55870454)
chr4 (204-255)||(4191678-4191730)
chr4 (216-256)||(56007637-56007677)
[»] chr8 (20 HSPs)
chr8 (204-332)||(28769343-28769470)
chr8 (204-255)||(5071047-5071098)
chr8 (204-335)||(11795031-11795161)
chr8 (218-256)||(40728497-40728535)
chr8 (218-255)||(10437838-10437875)
chr8 (204-252)||(11119082-11119130)
chr8 (204-256)||(11188234-11188286)
chr8 (211-250)||(8799351-8799390)
chr8 (208-255)||(26820142-26820189)
chr8 (218-289)||(35869790-35869860)
chr8 (218-257)||(39392739-39392778)
chr8 (218-256)||(14482155-14482193)
chr8 (222-256)||(20672729-20672763)
chr8 (236-334)||(26284797-26284894)
chr8 (218-286)||(926440-926508)
chr8 (218-255)||(12291696-12291733)
chr8 (204-253)||(29699193-29699242)
chr8 (216-256)||(8066920-8066960)
chr8 (216-252)||(10218865-10218901)
chr8 (204-256)||(42370440-42370492)
[»] chr6 (19 HSPs)
chr6 (202-254)||(32975915-32975967)
chr6 (218-257)||(24774711-24774750)
chr6 (218-332)||(4006667-4006780)
chr6 (203-255)||(24836279-24836331)
chr6 (219-254)||(4420571-4420606)
chr6 (204-255)||(10452440-10452491)
chr6 (204-255)||(33068641-33068692)
chr6 (218-288)||(1402949-1403018)
chr6 (204-286)||(2514641-2514722)
chr6 (218-252)||(30865435-30865469)
chr6 (218-256)||(35095006-35095044)
chr6 (218-247)||(13360688-13360717)
chr6 (202-255)||(27893984-27894037)
chr6 (215-288)||(28621158-28621230)
chr6 (204-256)||(6654554-6654606)
chr6 (218-286)||(9093606-9093673)
chr6 (218-250)||(30784510-30784542)
chr6 (202-250)||(32513762-32513809)
chr6 (202-254)||(33500562-33500614)
[»] chr2 (23 HSPs)
chr2 (204-288)||(10143111-10143194)
chr2 (218-288)||(17952749-17952818)
chr2 (218-326)||(656787-656894)
chr2 (209-288)||(44439408-44439486)
chr2 (204-254)||(33576675-33576725)
chr2 (204-248)||(5903240-5903284)
chr2 (204-288)||(28803554-28803637)
chr2 (204-255)||(3673746-3673797)
chr2 (233-288)||(5043608-5043662)
chr2 (225-288)||(11513858-11513920)
chr2 (204-254)||(27288572-27288622)
chr2 (204-254)||(34054982-34055032)
chr2 (202-255)||(15171187-15171240)
chr2 (218-255)||(32098388-32098425)
chr2 (218-255)||(33192146-33192183)
chr2 (218-255)||(37053547-37053584)
chr2 (218-250)||(1742117-1742149)
chr2 (204-256)||(3102632-3102684)
chr2 (202-254)||(5045238-5045290)
chr2 (204-256)||(5133711-5133763)
chr2 (207-255)||(5511507-5511555)
chr2 (204-256)||(9551518-9551570)
chr2 (219-255)||(33256694-33256730)
[»] chr1 (32 HSPs)
chr1 (202-255)||(15360831-15360884)
chr1 (263-333)||(39347970-39348040)
chr1 (228-333)||(5592688-5592792)
chr1 (218-271)||(15687138-15687190)
chr1 (222-287)||(28467356-28467420)
chr1 (218-251)||(30259571-30259604)
chr1 (202-291)||(48830121-48830209)
chr1 (202-255)||(49517007-49517060)
chr1 (218-335)||(28689453-28689571)
chr1 (218-254)||(35080151-35080187)
chr1 (204-255)||(7274019-7274070)
chr1 (204-255)||(15799643-15799694)
chr1 (218-288)||(27738228-27738297)
chr1 (218-284)||(48064262-48064327)
chr1 (219-256)||(6265048-6265085)
chr1 (218-335)||(10199409-10199525)
chr1 (218-255)||(14737785-14737822)
chr1 (218-255)||(15437916-15437953)
chr1 (218-255)||(17631181-17631218)
chr1 (204-253)||(23895275-23895324)
chr1 (218-335)||(25479534-25479650)
chr1 (202-255)||(44032079-44032132)
chr1 (203-255)||(4338587-4338639)
chr1 (207-255)||(6031559-6031607)
chr1 (233-289)||(10581124-10581179)
chr1 (204-256)||(15488893-15488945)
chr1 (204-288)||(17269189-17269272)
chr1 (224-256)||(21002112-21002144)
chr1 (204-332)||(29007720-29007847)
chr1 (203-255)||(36151585-36151637)
chr1 (204-248)||(36641814-36641858)
chr1 (220-248)||(52559915-52559943)
[»] chr3 (20 HSPs)
chr3 (220-288)||(28306113-28306180)
chr3 (222-288)||(1816540-1816605)
chr3 (204-253)||(8007777-8007826)
chr3 (218-255)||(49586996-49587033)
chr3 (218-255)||(51278237-51278274)
chr3 (202-249)||(24605102-24605149)
chr3 (202-289)||(37788798-37788883)
chr3 (204-255)||(40122832-40122883)
chr3 (204-255)||(48364959-48365010)
chr3 (218-248)||(2606375-2606405)
chr3 (202-255)||(12985403-12985454)
chr3 (218-288)||(24887331-24887400)
chr3 (218-248)||(34318041-34318071)
chr3 (202-255)||(2128331-2128384)
chr3 (218-255)||(38462234-38462271)
chr3 (218-255)||(44284138-44284175)
chr3 (223-255)||(13481253-13481285)
chr3 (218-250)||(20267108-20267140)
chr3 (220-256)||(31337480-31337516)
chr3 (216-256)||(42808930-42808970)
[»] scaffold0024 (1 HSPs)
scaffold0024 (204-288)||(27515-27598)
[»] scaffold0590 (1 HSPs)
scaffold0590 (204-250)||(1159-1205)
[»] scaffold0275 (1 HSPs)
scaffold0275 (204-250)||(2770-2816)
[»] scaffold0103 (1 HSPs)
scaffold0103 (205-255)||(51508-51558)
[»] scaffold0508 (1 HSPs)
scaffold0508 (204-248)||(9862-9906)


Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 5 - 335
Target Start/End: Original strand, 9872611 - 9872941
Alignment:
Q  5 gagtagcataggcgtcatagggtgtgcgaaaagcattccaaaactcctgttgtgttggttggaggtaagcagcagaggttctgccaacaatgcagcaggt 104  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9872611 gagtatcataagcgtcatagggtgtgcgaaaagcattccaaaactcctgttgtgttggttggaggtaagcagcagaggttctgccaacaatgcagcaggt 9872710  T
Q  105 atatgaattgaagttgtttgtttcgggttcataacttgttcaattttgttgttttagtgtcatgtttgaataaacagcttaattaagcgcgattatagtt 204  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9872711 atatgaattcaagttgtttgtttcgggttcataacttgttcaattttgttgttttagtgtcatgtttgaataaacagcttaattaagcgtgattatagtt 9872810  T
Q  205 tatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatga 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9872811 tatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatga 9872910  T
Q  305 aaatgagctggaaacaacttatggacatgtc 335  Q
    |||||||||||||||||||||||||||||||    
T  9872911 aaatgagctggaaacaacttatggacatgtc 9872941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 3241394 - 3241431
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||||||| |||||||||||||||||||||    
T  3241394 tttctataacaaaataaaaaataaagtcaaactgtttt 3241431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 17989136 - 17989103
Alignment:
Q  222 tataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||||||||||||||||||||||||||||    
T  17989136 tataacaaaatataaaataaagtcaaactgtttt 17989103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 30496641 - 30496694
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||   | ||||||||||||||||||||||||||||||| ||||||    
T  30496641 gtttatgtataaactatttctataacaaaatataaaataaagtcaaattgtttt 30496694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 44151592 - 44151481
Alignment:
Q  223 ataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatgaaaatgagctggaaacaac 322  Q
    ||||||||| ||| |||||||| |||||||||  | ||| ||||| |||||| |||||||| ||||  || ||||  |||| |||| ||||| ||||| |    
T  44151592 ataacaaaagatagaataaagtaaaactgtttc-catataagctataagttgttttcataaactatcttgaaaagcttatggaaataagctgaaaacatc 44151494  T
Q  323 ttatggacatgtc 335  Q
    |||||||||||||    
T  44151493 ttatggacatgtc 44151481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 257
Target Start/End: Original strand, 2999144 - 2999183
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttc 257  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  2999144 tttctataacaaaagataaaataaagtcaaaccgtttttc 2999183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 28165030 - 28165081
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||| ||| |||||||||||||| ||||||| |||||||| ||||||    
T  28165030 ttatgtataagttctttctataacaaaagataaaatgaagtcaaattgtttt 28165081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 45593850 - 45593799
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||| | | ||||| |||||||| |||||||||||||||||||||||    
T  45593850 ttatgtataagctatttctgtaacaaaacataaaataaagtcaaactgtttt 45593799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 5006623 - 5006589
Alignment:
Q  221 ctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||||| |||||||||||||||||||||||    
T  5006623 ctataacaaaagataaaataaagtcaaactgtttt 5006589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 9527205 - 9527140
Alignment:
Q  220 tctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagct 286  Q
    |||||||||||| ||| ||||||||||||||| ||||| ||| | ||| |||||| |||||||||||    
T  9527205 tctataacaaaagatataataaagtcaaactg-ttttcatataaactataagttgttttcataagct 9527140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 24363668 - 24363602
Alignment:
Q  269 aagttgatttcataagctattctgcaaagaatatgaaaatgagctggaaacaacttatggacatgtc 335  Q
    |||||| ||||||||||||| ||| | ||  |||| |||| ||||| ||||||||||||||||||||    
T  24363668 aagttgttttcataagctatcctggagaggttatggaaataagctgaaaacaacttatggacatgtc 24363602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 39591593 - 39591547
Alignment:
Q  209 tatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||| ||| |||||||||||||| |||||||||||||||| ||||||    
T  39591593 tataagttatttctataacaaaagataaaataaagtcaaattgtttt 39591547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 753321 - 753288
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactg 251  Q
    ||||||||||||||||| ||||||||||||||||    
T  753321 tttctataacaaaatatgaaataaagtcaaactg 753288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 1417201 - 1417285
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagcta 287  Q
    |||||||||||   | ||| |||||||||| |||||||||||||||| || ||||| ||| ||| | |||||| ||||||||||||    
T  1417201 gtttatgtataaactatttatataacaaaagataaaataaagtcaaattg-ttttcatataagcaataagttgttttcataagcta 1417285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 5373164 - 5373205
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtc 245  Q
    ||||||||||| | |||||||||||||| |||||||||||||    
T  5373164 ttatgtatatgctatttctataacaaaagataaaataaagtc 5373205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 47004040 - 47004108
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagcta 287  Q
    |||||||||||| | |||||||||||||||||| |||||  ||||| ||| ||| || ||||||||||||    
T  47004040 tttctataacaatagataaaataaagtcaaactattttt-atatgaactataagctgttttcataagcta 47004108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 47046232 - 47046156
Alignment:
Q  211 tatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    |||||| |||||| ||||||  |||||||||||||||| || ||||| ||| |||| | ||||| |||||||||||||    
T  47046232 tatgttatttctacaacaaaggataaaataaagtcaaattg-ttttcatataagctccgagttgttttcataagctat 47046156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 49060478 - 49060523
Alignment:
Q  203 tttatgtatatgttgtttctataacaaaatataaaataaagtcaaa 248  Q
    |||||||||| | | |||||||||||||| ||||||||||||||||    
T  49060478 tttatgtataagctatttctataacaaaaaataaaataaagtcaaa 49060523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 992013 - 992053
Alignment:
Q  208 gtatatgttgtttctataacaaaatataaaataaagtcaaa 248  Q
    ||||| |||||||||||||||||| ||||||||||| ||||    
T  992013 gtataagttgtttctataacaaaaaataaaataaagacaaa 992053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 31341133 - 31341185
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgttttt 256  Q
    ||||||||| | | ||| |||||||||| ||||||||||||||||||| ||||    
T  31341133 ttatgtataagctatttgtataacaaaagataaaataaagtcaaactggtttt 31341185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 35809037 - 35808989
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaact 250  Q
    ||||||||||| | | |||||||||||||| |||||||| |||||||||    
T  35809037 gtttatgtataagctatttctataacaaaagataaaatatagtcaaact 35808989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 332
Target Start/End: Original strand, 44821930 - 44822025
Alignment:
Q  236 aaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatgaaaatgagctggaaacaacttatggacat 332  Q
    ||||||||||||| ||||||| |||| || || ||| || ||||||||||||||||| | |   ||||||||| || || ||||||||||| |||||    
T  44821930 aaataaagtcaaattgttttt-gtataagttataagctgttttcataagctattctggagaacttatgaaaataagttgaaaacaacttattgacat 44822025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 335
Target Start/End: Complemental strand, 46104640 - 46104568
Alignment:
Q  263 agctacaagttgatttcataagctattctgcaaagaatatgaaaatgagctggaaacaacttatggacatgtc 335  Q
    ||||| |||||| ||||||||||||| ||| | ||  ||||||||| |||||||||||  |||| ||||||||    
T  46104640 agctataagttgttttcataagctatgctgaagagcttatgaaaataagctggaaacattttattgacatgtc 46104568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 29117061 - 29117010
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  29117061 ttatgtatatgttatttctataacaaaagataaaataaagtcaaactgtttt 29117010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 2568610 - 2568680
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    |||||||||||| |||||||| ||||| ||| |||||||||||| ||||| |||||| |||||||||||||    
T  2568610 tttctataacaagatataaaacaaagttaaattgtttttcgtataagctataagttgttttcataagctat 2568680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 985573 - 985623
Alignment:
Q  205 tatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||| |||| ||||||||| |||||||||||||||||||||||    
T  985573 tatgtatatgttatttccataacaaaagataaaataaagtcaaactgtttt 985623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 335
Target Start/End: Complemental strand, 15074864 - 15074750
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatgaaaatgagctggaa 317  Q
    ||||||||| |||| ||| |||| | ||||||||||||    |||||||| |||||| ||||||||| ||| ||| ||||  |||| |||| ||||| ||    
T  15074864 tttctataataaaagatagaatataatcaaactgttttc---atgagctataagttgttttcataagttatactggaaagcttatggaaataagctgaaa 15074768  T
Q  318 acaacttatggacatgtc 335  Q
    ||| ||||||||||||||    
T  15074767 acagcttatggacatgtc 15074750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 14295459 - 14295528
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    |||||||||||||| ||||||||||||||||||| ||||| ||| ||||| ||| || |||| ||||||||    
T  14295459 tttctataacaaaagataaaataaagtcaaactg-ttttcatataagctataagctgttttcgtaagctat 14295528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 334
Target Start/End: Complemental strand, 18704166 - 18704038
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaaga--ata 301  Q
    ||||||||| ||| |||||||||||||| || |||||||||||| || |||||  ||| ||||| |||||| |||||||||||||  | ||||||   ||    
T  18704166 ttatgtataagttatttctataacaaaagat-aaataaagtcaagctattttt-atataagctataagttgttttcataagctat--tacaaagatctta 18704071  T
Q  302 tgaaaatgagctggaaacaacttatggacatgt 334  Q
    || |||| ||||| ||||||||||| |||||||    
T  18704070 tggaaataagctgaaaacaacttatagacatgt 18704038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 335
Target Start/End: Original strand, 35960367 - 35960482
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatgaaaatgagctggaa 317  Q
    ||||||||| |||| |||||||||||||||||  | |||| ||| | ||| |||||||||||||||||||| ||| ||||  ||   |||| ||||  ||    
T  35960367 tttctataataaaagataaaataaagtcaaac--tatttcatataaactataagttgatttcataagctatcctggaaagcgtaaagaaataagctaaaa 35960464  T
Q  318 acaacttatggacatgtc 335  Q
    ||| ||||||||||||||    
T  35960465 acatcttatggacatgtc 35960482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 335
Target Start/End: Complemental strand, 18543306 - 18543198
Alignment:
Q  226 acaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatgaaaatgagctggaaacaactta 325  Q
    ||||||||| |||||||||||||||  ||||  ||| || || |||||| ||||||||||||| ||| | ||  |||| |||| ||||| |||||||| |    
T  18543306 acaaaatattaaataaagtcaaacttgtttttatataagatataagttgttttcataagctatcctggagagcttatg-aaataagctgaaaacaactca 18543208  T
Q  326 tggacatgtc 335  Q
    ||||||||||    
T  18543207 tggacatgtc 18543198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 28586883 - 28586846
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||||| |||||||||||||||||||||||    
T  28586883 tttctataacaaaagataaaataaagtcaaactgtttt 28586846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 35135795 - 35135742
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||||| | | |||||||||||||| |||||||||||||||||| ||||    
T  35135795 gtttatgtataagatatttctataacaaaagataaaataaagtcaaactatttt 35135742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 39823234 - 39823171
Alignment:
Q  222 tataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagct 286  Q
    |||||||||| ||||||||||||||||||   |||| ||| |||||||||||| |||||||||||    
T  39823234 tataacaaaagataaaataaagtcaaact-actttcatataagctacaagttgttttcataagct 39823171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 40048411 - 40048371
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagt 244  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  40048411 ttatgtataagttgtttctataacaaaagataaaataaagt 40048371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 912782 - 912736
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaa 248  Q
    ||||||| ||| ||| ||||||||||| |||||||||||||||||||    
T  912782 gtttatgaataagttatttctataacacaatataaaataaagtcaaa 912736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 10280707 - 10280657
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgttt 254  Q
    ||||| ||||| | |||||||||||||| ||| ||||||||||||||||||    
T  10280707 ttatgcatatgctatttctataacaaaagatagaataaagtcaaactgttt 10280657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 32969238 - 32969204
Alignment:
Q  214 gttgtttctataacaaaatataaaataaagtcaaa 248  Q
    |||||||||||||||||| ||||||||||||||||    
T  32969238 gttgtttctataacaaaagataaaataaagtcaaa 32969204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 7096258 - 7096213
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaac 249  Q
    ||||||||| | | |||||||||||||| |||||||||||||||||    
T  7096258 ttatgtataagctatttctataacaaaagataaaataaagtcaaac 7096213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 10303754 - 10303791
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  10303754 tttctataacaaaagataaaataaagtcaaattgtttt 10303791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 37063191 - 37063154
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  37063191 tttctataacaaaagataaaataaagtcaaactatttt 37063154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 12521490 - 12521539
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||| |||||||||||||||||   ||||||| ||||||||||||||    
T  12521490 ttatgtataagttgtttctataacaaa--ctaaaatagagtcaaactgtttt 12521539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 12595860 - 12595820
Alignment:
Q  215 ttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||||||||||| |||||||||||| ||| ||||||    
T  12595860 ttgtttctataacaaaagataaaataaagttaaattgtttt 12595820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 30585630 - 30585666
Alignment:
Q  219 ttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||||||||||||||| |||| |||||||    
T  30585630 ttctataacaaaatataaaataaattcaatctgtttt 30585666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 31687993 - 31688025
Alignment:
Q  223 ataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||| |||||||||||||||||||||||    
T  31687993 ataacaaaacataaaataaagtcaaactgtttt 31688025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 31694473 - 31694509
Alignment:
Q  220 tctataacaaaatataaaataaagtcaaactgttttt 256  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  31694473 tctataacaaaacataaactaaagtcaaactgttttt 31694509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 35095900 - 35095864
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgttt 254  Q
    |||||||||||||| |||||||||||||||| |||||    
T  35095900 tttctataacaaaagataaaataaagtcaaattgttt 35095864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 49219082 - 49219202
Alignment:
Q  208 gtatatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatgaaaa 307  Q
    ||||| ||| ||||||||||||||||||||||||||||||| |  ||||| ||| ||||| |||||| |||||||| ||||  |  | ||| |||| |||    
T  49219082 gtataagttatttctataacaaaatataaaataaagtcaaa-ttattttcatataagctataagttgttttcataaactatcttaaagagattatggaaa 49219180  T
Q  308 tgagctggaaacaacttatgga 329  Q
    | ||||| ||||||||||||||    
T  49219181 taagctgaaaacaacttatgga 49219202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 20105950 - 20105907
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtat 261  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  20105950 tttctataacaaaatataaaataaagtcaaattgtttttcgtat 20105907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 30207701 - 30207620
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagcta 287  Q
    |||||||||||||  ||||||||||||| |||||||||| |||||||| ||||| ||| ||||| |||||| ||||||||||||    
T  30207701 ttatgtatatgttagttctataacaaaaaataaaataaa-tcaaactg-ttttcatataagctataagttgttttcataagcta 30207620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 333
Target Start/End: Original strand, 11802488 - 11802601
Alignment:
Q  219 ttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatgaaaatgagctggaaa 318  Q
    ||||||||||||| |||||||||||||||| | ||| ||  || |||||||||||| |||||||||||||| || | ||  ||||| ||| ||||| |||    
T  11802488 ttctataacaaaagataaaataaagtcaaatt-tttctcacataagctacaagttgttttcataagctattatggagagcttatgagaataagctgaaaa 11802586  T
Q  319 caacttatggacatg 333  Q
    || ||||||| ||||    
T  11802587 cagcttatggccatg 11802601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 332
Target Start/End: Original strand, 17884021 - 17884134
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatgaaaatgagctggaa 317  Q
    |||||||||||||| |||||||||||| ||| ||||||| |||| || ||  ||||| |||||||||||||  || | ||  ||||||||| ||||| ||    
T  17884021 tttctataacaaaagataaaataaagttaaattgttttt-gtataagttatcagttgttttcataagctatattggagagcttatgaaaattagctgaaa 17884119  T
Q  318 acaacttatggacat 332  Q
    |||||||||| ||||    
T  17884120 acaacttatgaacat 17884134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 54327576 - 54327529
Alignment:
Q  208 gtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||| |||||||||||||||||| |||||| ||||||||||||||||    
T  54327576 gtataagttgtttctataacaaaagataaaacaaagtcaaactgtttt 54327529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 2169967 - 2170017
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgttt 254  Q
    |||||||||  ||||||||||||||||| |||||||| |||||||||||||    
T  2169967 ttatgtataaattgtttctataacaaaaaataaaatagagtcaaactgttt 2170017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 51044592 - 51044544
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaact 250  Q
    ||||||||||| | | |||||||||||||| ||||||||||||||||||    
T  51044592 gtttatgtataagctatttctataacaaaagataaaataaagtcaaact 51044544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 3662304 - 3662339
Alignment:
Q  221 ctataacaaaatataaaataaagtcaaactgttttt 256  Q
    ||||||||||| ||||||||||||||||||||||||    
T  3662304 ctataacaaaagataaaataaagtcaaactgttttt 3662339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 5131363 - 5131312
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||| ||||||| |||||||||| |||||||||||| ||| ||||||    
T  5131363 ttatgtataagttgtttatataacaaaagataaaataaagttaaaatgtttt 5131312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 335
Target Start/End: Complemental strand, 7694109 - 7694011
Alignment:
Q  236 aaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatgaaaatgagctggaaacaacttatggacatgtc 335  Q
    |||| |||||||||||||||| |||| ||||| ||| || ||||||||| ||| ||| | ||  |||| |||| ||||| |||||||||||| |||||||    
T  7694109 aaatgaagtcaaactgttttt-gtataagctataagctgttttcataagttatcctggagagtttatggaaataagctgaaaacaacttatgaacatgtc 7694011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 24443991 - 24444061
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctatt 289  Q
    |||||| |||||||||||||||||| ||||||   ||||| ||| ||||| |||||| ||||||||||||||    
T  24443991 tttctacaacaaaatataaaataaattcaaac-aattttcatataagctataagttgttttcataagctatt 24444061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 52645883 - 52645828
Alignment:
Q  201 agtttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgttttt 256  Q
    |||||||||||| | | |||||||||||||| ||||||| || |||||||||||||    
T  52645883 agtttatgtataagctatttctataacaaaagataaaatcaattcaaactgttttt 52645828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 19422312 - 19422402
Alignment:
Q  165 catgtttgaataaacagcttaattaagcgcg-attata-----gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaac 249  Q
    |||||||| |||||||||||||||||||||  || |||     | ||||||||| ||| |||||||||||||| ||| |||||||||||||    
T  19422312 catgtttggataaacagcttaattaagcgcttatcatataaatgcttatgtataagttatttctataacaaaagatataataaagtcaaac 19422402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 43372082 - 43372017
Alignment:
Q  222 tataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    |||||||||| |||||||| |||||||||||||||  ||| ||||| ||  ||||||||||||||||    
T  43372082 tataacaaaagataaaatacagtcaaactgttttt-atataagctataaactgatttcataagctat 43372017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 256
Target Start/End: Original strand, 52926181 - 52926219
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgttttt 256  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  52926181 tttctataacaaaagataaaatatagtcaaactgttttt 52926219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 20936119 - 20936082
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  20936119 tttctataacaaaagataaaataaagtcaaactatttt 20936082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 23815323 - 23815360
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  23815323 tttctataacaaaagataaaataatgtcaaactgtttt 23815360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 24929446 - 24929483
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  24929446 tttctataacaaaagataaaataaagtctaactgtttt 24929483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 24936249 - 24936286
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataa 241  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  24936249 ttatgtataagttatttctataacaaaatataaaataa 24936286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 336
Target Start/End: Complemental strand, 52746952 - 52746840
Alignment:
Q  223 ataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatgaaaatgagctggaaacaac 322  Q
    ||||||||| |||||||||||| ||| ||||||| || | ||| | ||| || |||||||||||||  || || |  ||||||||| ||||| ||||| |    
T  52746952 ataacaaaagataaaataaagttaaattgttttt-gtgtaagccataagctgttttcataagctatcttgtaaggcttatgaaaatcagctgaaaacagc 52746854  T
Q  323 ttatggacatgtct 336  Q
    ||||| ||||||||    
T  52746853 ttatgaacatgtct 52746840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 54325154 - 54325117
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  54325154 tttctattacaaaagataaaataaagtcaaactgtttt 54325117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 55870454 - 55870390
Alignment:
Q  222 tataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagcta 287  Q
    |||||||||| || |||||||||||||||| |||||  || ||||| |||||| ||||||||||||    
T  55870454 tataacaaaagatcaaataaagtcaaactg-ttttcacataagctataagttgttttcataagcta 55870390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 4191678 - 4191730
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaa-taaagtcaaactgtttt 255  Q
    ||||||||| | | |||||||||||||| |||||| |||||||||||||||||    
T  4191678 ttatgtataagctatttctataacaaaagataaaaataaagtcaaactgtttt 4191730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 56007637 - 56007677
Alignment:
Q  216 tgtttctataacaaaatataaaataaagtcaaactgttttt 256  Q
    ||||||||| |||||| | ||||||||||||||||||||||    
T  56007637 tgtttctatgacaaaagaaaaaataaagtcaaactgttttt 56007677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 332
Target Start/End: Complemental strand, 28769470 - 28769343
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatg 303  Q
    ||||||||| | | || |||||||||| |||||||| |||||||||| |||| | ||| ||||| ||| || |||||||||||||| || | ||  ||||    
T  28769470 ttatgtataagctattcctataacaaactataaaattaagtcaaactatttt-cttataagctataagctgttttcataagctattttggagagtttatg 28769372  T
Q  304 aaaatgagctggaaacaacttatggacat 332  Q
     |||| ||||| |||||||||||||||||    
T  28769371 gaaataagctgaaaacaacttatggacat 28769343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 5071098 - 5071047
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||||| ||||    
T  5071098 ttatgtataagttgtttctatagtaaaatataaaataaagtcaaactttttt 5071047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 335
Target Start/End: Original strand, 11795031 - 11795161
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatg 303  Q
    ||||||||| | | ||||||| |||||| ||| |||||||||| |||||||| | ||| || || ||| ||||||||||||||||| || | ||  ||||    
T  11795031 ttatgtataagctttttctatgacaaaacatacaataaagtcacactgtttt-catataagttataagctgatttcataagctattatggagagcttatg 11795129  T
Q  304 aaaatgagctggaaacaacttatggacatgtc 335  Q
     |||| ||||| |||||  |||||||||||||    
T  11795130 gaaataagctgaaaacaggttatggacatgtc 11795161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 40728535 - 40728497
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgttttt 256  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  40728535 tttctataacaaaagataaaataaagtcaaactgttttt 40728497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 10437838 - 10437875
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10437838 tttctataacaaaagataaaataaagtcaaactgtttt 10437875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 11119130 - 11119082
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgt 252  Q
    ||||||||| | | |||||||||||||| ||||||||||||||||||||    
T  11119130 ttatgtatacgatatttctataacaaaagataaaataaagtcaaactgt 11119082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 11188286 - 11188234
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgttttt 256  Q
    ||||||||| |||||||||||||||||| ||||||||||  |||||| |||||    
T  11188286 ttatgtataagttgtttctataacaaaagataaaataaaaccaaactattttt 11188234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 8799351 - 8799390
Alignment:
Q  211 tatgttgtttctataacaaaatataaaataaagtcaaact 250  Q
    |||||| |||||||||||||| ||||||||||||||||||    
T  8799351 tatgttatttctataacaaaagataaaataaagtcaaact 8799390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 26820142 - 26820189
Alignment:
Q  208 gtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||| ||| |||||||||||||| |||||||||||||||||| ||||    
T  26820142 gtataagttatttctataacaaaagataaaataaagtcaaactatttt 26820189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 35869790 - 35869860
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctatt 289  Q
    |||||| |||||||||||||||||| ||||||   ||||| ||| ||||| |||||| ||||||||||||||    
T  35869790 tttctacaacaaaatataaaataaattcaaac-aattttcatataagctataagttgttttcataagctatt 35869860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 257
Target Start/End: Complemental strand, 39392778 - 39392739
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttc 257  Q
    |||||||||||||| |||||||||||||||||||| ||||    
T  39392778 tttctataacaaaagataaaataaagtcaaactgtgtttc 39392739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 256
Target Start/End: Original strand, 14482155 - 14482193
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgttttt 256  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  14482155 tttctataacaaaagataaaataaagtcaaattgttttt 14482193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 256
Target Start/End: Original strand, 20672729 - 20672763
Alignment:
Q  222 tataacaaaatataaaataaagtcaaactgttttt 256  Q
    |||||||||| ||||||||||||||||||||||||    
T  20672729 tataacaaaagataaaataaagtcaaactgttttt 20672763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 334
Target Start/End: Complemental strand, 26284894 - 26284797
Alignment:
Q  236 aaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatgaaaatgagctggaaacaacttatggacatgt 334  Q
    |||||||||||||||||||| | ||| |  ||||||||| |||| |||| ||| ||| | ||  ||||||||| ||||| ||||||||||| |||||||    
T  26284894 aaataaagtcaaactgtttt-catataaagtacaagttgttttcgtaagttatcctgtatagcttatgaaaataagctgaaaacaacttatagacatgt 26284797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 926440 - 926508
Alignment:
Q  218 tttctataacaaaatataaaataaagtc-aaactgtttttcgtatgagctacaagttgatttcataagct 286  Q
    ||||||||||| || ||||||||||||| ||||||||||| |||| | ||| |||||| |||||||||||    
T  926440 tttctataacacaagataaaataaagtcaaaactgttttt-gtattatctataagttgttttcataagct 926508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 12291733 - 12291696
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  12291733 tttctataacaaaagataacataaagtcaaactgtttt 12291696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 29699193 - 29699242
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtt 253  Q
    ||||||| | ||| |||||||||||||| |||||||||||||||| ||||    
T  29699193 ttatgtacaagttatttctataacaaaagataaaataaagtcaaaatgtt 29699242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 8066960 - 8066920
Alignment:
Q  216 tgtttctataacaaaatataaaataaagtcaaactgttttt 256  Q
    ||||| |||||||||| ||||||||||||||||||| ||||    
T  8066960 tgtttatataacaaaagataaaataaagtcaaactggtttt 8066920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 10218865 - 10218901
Alignment:
Q  216 tgtttctataacaaaatataaaataaagtcaaactgt 252  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  10218865 tgtttccataacaaaagataaaataaagtcaaactgt 10218901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 42370492 - 42370440
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgttttt 256  Q
    ||||||||| | ||| ||| |||||||||||||| |||||||||||| |||||    
T  42370492 ttatgtataagctgtatctgtaacaaaatataaagtaaagtcaaactattttt 42370440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 32975915 - 32975967
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgttt 254  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||||||||||||    
T  32975915 gtttatgtataagttatttctgtaacaaaatataaaataaagtcaaactgttt 32975967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 257
Target Start/End: Original strand, 24774711 - 24774750
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttc 257  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24774711 tttctataacaaaatataaaataaagtcaaactgtttttc 24774750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 332
Target Start/End: Original strand, 4006667 - 4006780
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatgaaaatgagctggaa 317  Q
    |||||||||||||  |||||||||||||||| |||||||  ||| ||||| |||||| ||||||||||||| |   | ||  ||||||||| ||||| ||    
T  4006667 tttctataacaaatgataaaataaagtcaaattgttttt-atataagctataagttgttttcataagctatccctgagaggttatgaaaataagctgaaa 4006765  T
Q  318 acaacttatggacat 332  Q
    | |||||||||||||    
T  4006766 ataacttatggacat 4006780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 24836331 - 24836279
Alignment:
Q  203 tttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||| ||| |||||||||||||| |||||||||||||||| ||||||    
T  24836331 tttatgtataagttatttctataacaaaagataaaataaagtcaaattgtttt 24836279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 4420571 - 4420606
Alignment:
Q  219 ttctataacaaaatataaaataaagtcaaactgttt 254  Q
    ||||||||||||| ||||||||||||||||||||||    
T  4420571 ttctataacaaaagataaaataaagtcaaactgttt 4420606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 10452491 - 10452440
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||| | | ||||||||||||||||||||||||| ||||||| ||||    
T  10452491 ttatgtataagctatttctataacaaaatataaaataaaatcaaactatttt 10452440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 33068692 - 33068641
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||| ||| |||||||||||||| |||||||||  ||||||||||||    
T  33068692 ttatgtataagttatttctataacaaaagataaaataatatcaaactgtttt 33068641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 1402949 - 1403018
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    |||||||||||||| |||||||||||| |||||  ||||| ||| ||||| || ||| |||||||||||||    
T  1402949 tttctataacaaaagataaaataaagttaaact-attttcatataagctataaattgttttcataagctat 1403018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 2514641 - 2514722
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagct 286  Q
    ||||||||| | | ||||||||| |||| ||||||||||||||||||  ||||  ||||||||| |||||  |||||||||||    
T  2514641 ttatgtataagctatttctataataaaagataaaataaagtcaaactaatttt-atatgagctataagttattttcataagct 2514722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 252
Target Start/End: Original strand, 30865435 - 30865469
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgt 252  Q
    |||||||||||||| ||||||||||||||||||||    
T  30865435 tttctataacaaaagataaaataaagtcaaactgt 30865469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 35095044 - 35095006
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgttttt 256  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  35095044 tttctataacaaaatataaaataatgtcaaattgttttt 35095006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 13360688 - 13360717
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaa 247  Q
    ||||||||||||||||||||||||||||||    
T  13360688 tttctataacaaaatataaaataaagtcaa 13360717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 27893984 - 27894037
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||||| | | |||||| |||| ||||||||||||||||||| ||||||    
T  27893984 gtttatgtataagctatttctacaacagaatataaaataaagtcaaattgtttt 27894037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 28621230 - 28621158
Alignment:
Q  215 ttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    |||||| |||||||||| |||||||||||| ||| ||||||| |||| ||||||||| || || |||| |||||    
T  28621230 ttgtttttataacaaaagataaaataaagttaaattgttttt-gtataagctacaagatgtttacataggctat 28621158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 6654554 - 6654606
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgttttt 256  Q
    ||||||||| ||| |||||||||||||  ||||||| |||||||| |||||||    
T  6654554 ttatgtataagttatttctataacaaataataaaattaagtcaaattgttttt 6654606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 9093673 - 9093606
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagct 286  Q
    |||||||| ||||| |||||||||||| ||| || ||||||||| ||||| ||| || |||||||||||    
T  9093673 tttctatatcaaaagataaaataaagttaaattg-ttttcgtataagctataagctgttttcataagct 9093606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 30784510 - 30784542
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaact 250  Q
    |||||||||||||| ||||||||||||||||||    
T  30784510 tttctataacaaaagataaaataaagtcaaact 30784542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 32513762 - 32513809
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaact 250  Q
    ||||||| ||| ||| |||||||||||||| ||||||||||||||||||    
T  32513762 gtttatgcataagttatttctataacaaaa-ataaaataaagtcaaact 32513809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 33500614 - 33500562
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgttt 254  Q
    ||||||||||| | | |||||||||||||| ||||| |||| |||||||||||    
T  33500614 gtttatgtataagctatttctataacaaaagataaagtaaaatcaaactgttt 33500562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 10143111 - 10143194
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    ||||||||| ||| |||||||||||||| ||||||| ||||||||||||||||  ||| ||||| |||||  |||||||||||||    
T  10143111 ttatgtataagttatttctataacaaaagataaaattaagtcaaactgttttt-atataagctataagtttttttcataagctat 10143194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 17952818 - 17952749
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    |||||||||||||| ||||||||||||||||||  ||||| ||| ||||||||| || |||||||||||||    
T  17952818 tttctataacaaaagataaaataaagtcaaact-attttcatataagctacaagatgttttcataagctat 17952749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 326
Target Start/End: Complemental strand, 656894 - 656787
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatgaaaatgagctggaa 317  Q
    |||||||||||||| |||||||| | ||||| |||||| ||||| ||||  ||||||||||||||||||||  |||| ||  ||||||||| || || ||    
T  656894 tttctataacaaaagataaaatataatcaaattgtttt-cgtataagctgtaagttgatttcataagctatcttgcagagcttatgaaaataagatgaaa 656796  T
Q  318 acaacttat 326  Q
    || ||||||    
T  656795 actacttat 656787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 44439486 - 44439408
Alignment:
Q  209 tatatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    |||| ||| |||| |||||||||||||||||||||| ||||||||||| |||| ||||| || ||| ||| |||||||||    
T  44439486 tataagttatttccataacaaaatataaaataaagttaaactgttttt-gtataagctataaattgtttttataagctat 44439408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 33576725 - 33576675
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgttt 254  Q
    ||||||||| ||| |||||||||||||| ||| ||||||||||||||||||    
T  33576725 ttatgtataggttatttctataacaaaagatacaataaagtcaaactgttt 33576675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 5903240 - 5903284
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaa 248  Q
    ||||| ||| ||| |||||||||||||||||||||||||||||||    
T  5903240 ttatgcatacgttatttctataacaaaatataaaataaagtcaaa 5903284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 288
Target Start/End: Complemental strand, 28803637 - 28803554
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    |||| |||| ||| |||| ||||||||| |||||||||||||||||||  |||| ||| |||||||||||| |||| ||| ||||    
T  28803637 ttatatataagttatttcgataacaaaagataaaataaagtcaaactg-atttcatataagctacaagttgttttcttaaactat 28803554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 3673746 - 3673797
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||  ||| ||||||||||||||||||||||||||| ||| ||||||    
T  3673746 ttatgtattagttatttctataacaaaatataaaataaagttaaattgtttt 3673797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 5043662 - 5043608
Alignment:
Q  233 ataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    ||||||||||||||||||| ||||| ||| ||||| |||||| |||||||||||||    
T  5043662 ataaaataaagtcaaactg-ttttcatataagctagaagttgttttcataagctat 5043608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 11513858 - 11513920
Alignment:
Q  225 aacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    ||||||| |||||||||||||||| || ||||| ||| ||||| |||||| |||||||||||||    
T  11513858 aacaaaagataaaataaagtcaaattg-ttttcatataagctataagttgttttcataagctat 11513920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 27288572 - 27288622
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgttt 254  Q
    ||||||| | ||||||||||||| |||| |||||||||| |||||||||||    
T  27288572 ttatgtaaaagttgtttctataataaaagataaaataaaatcaaactgttt 27288622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 34055032 - 34054982
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgttt 254  Q
    ||||||||| | | |||||||||||||| ||||||||||| ||||||||||    
T  34055032 ttatgtataggctatttctataacaaaagataaaataaaggcaaactgttt 34054982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 15171187 - 15171240
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||||| ||| ||||||||||| || ||||| |||||||||| ||||||    
T  15171187 gtttatgtataagttttttctataacagaagataaattaaagtcaaaatgtttt 15171240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 32098425 - 32098388
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  32098425 tttctataacaaaagataaaataaagtcaaagtgtttt 32098388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 33192146 - 33192183
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||||| || |||||||||||||||||||||||    
T  33192146 tttctataacataagataaaataaagtcaaactgtttt 33192183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 37053547 - 37053584
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||||| || |||||||||||||||||||||||    
T  37053547 tttctataacagaaaataaaataaagtcaaactgtttt 37053584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 1742149 - 1742117
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaact 250  Q
    |||||||||||||||||||||| ||||||||||    
T  1742149 tttctataacaaaatataaaatgaagtcaaact 1742117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 3102632 - 3102684
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgttttt 256  Q
    ||||||||| | | ||| |||| |||||||||||||||||||||||| |||||    
T  3102632 ttatgtataagctatttttatagcaaaatataaaataaagtcaaactattttt 3102684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 5045290 - 5045238
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgttt 254  Q
    ||||||||||| | | ||| |||||||||| ||||||||||||||| ||||||    
T  5045290 gtttatgtataagctatttttataacaaaagataaaataaagtcaagctgttt 5045238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 5133711 - 5133763
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgttttt 256  Q
    ||||||||| | | |||||||||||||| |||||||||||  |||||||||||    
T  5133711 ttatgtataagctatttctataacaaaagataaaataaagataaactgttttt 5133763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 5511507 - 5511555
Alignment:
Q  207 tgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||| ||| |||||||||  |||||||||||||||||||||| ||||    
T  5511507 tgtataagttatttctataatgaaatataaaataaagtcaaactttttt 5511555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 9551518 - 9551570
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgttttt 256  Q
    ||||||||| | | ||| ||||| ||| |||||||||||||||||||||||||    
T  9551518 ttatgtataagctatttttataataaattataaaataaagtcaaactgttttt 9551570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 33256694 - 33256730
Alignment:
Q  219 ttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||||| | |||||||||||||||||||||||    
T  33256694 ttctataacaatagataaaataaagtcaaactgtttt 33256730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 15360831 - 15360884
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||||  ||| |||||||||||||| |||||||||||||||||||||||    
T  15360831 gtttatgtattagttatttctataacaaaagataaaataaagtcaaactgtttt 15360884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 333
Target Start/End: Complemental strand, 39348040 - 39347970
Alignment:
Q  263 agctacaagttgatttcataagctattctgcaaagaatatgaaaatgagctggaaacaacttatggacatg 333  Q
    ||||| |||||| |||||||| |||| ||||||||  |||| |||| ||||| ||||||||||||||||||    
T  39348040 agctataagttgttttcataaactatcctgcaaagcttatggaaataagctgaaaacaacttatggacatg 39347970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 333
Target Start/End: Complemental strand, 5592792 - 5592688
Alignment:
Q  228 aaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatgaaaatgagctggaaacaacttatg 327  Q
    |||| ||||||||||||| || |||| | | ||| ||||| |||||| |||||||||||| |||  | ||  ||||||||| ||||||||||||||||||    
T  5592792 aaaagataaaataaagtcgaattgttgt-catataagctataagttgttttcataagctagtcttaagagcttatgaaaataagctggaaacaacttatg 5592694  T
Q  328 gacatg 333  Q
    | ||||    
T  5592693 gtcatg 5592688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 15687190 - 15687138
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaag 271  Q
    ||||||||||||||||||||||||||| ||| || ||||||||| |||||||||    
T  15687190 tttctataacaaaatataaaataaagttaaattg-ttttcgtataagctacaag 15687138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 28467420 - 28467356
Alignment:
Q  222 tataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagcta 287  Q
    |||||||||| |||||||||||||||| | |||| | ||| |||||||||||| ||||||||||||    
T  28467420 tataacaaaagataaaataaagtcaaattatttt-catataagctacaagttgttttcataagcta 28467356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 30259604 - 30259571
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactg 251  Q
    ||||||||||||||||||||||||||||||||||    
T  30259604 tttctataacaaaatataaaataaagtcaaactg 30259571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 48830209 - 48830121
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattct 291  Q
    ||||||||||| ||| ||||||| || ||| ||||||||||||||||||  ||||| ||| ||||| ||  || ||||||||||||||||    
T  48830209 gtttatgtataagttatttctattaccaaagataaaataaagtcaaact-attttcatataagctataaactgttttcataagctattct 48830121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 49517007 - 49517060
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||| |||||| ||| |||||||||||||| |||||||||||||||| ||||||    
T  49517007 gtttgtgtataagttatttctataacaaaagataaaataaagtcaaattgtttt 49517060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 335
Target Start/End: Complemental strand, 28689571 - 28689453
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcata--agctattctgcaaagaatatgaaaatgagctgg 315  Q
    |||||||| ||||| ||||||||||  |||  || ||||| ||| ||||| |||||| |||||||  ||||||  || ||||  ||||||||| |||||     
T  28689571 tttctatatcaaaagataaaataaatgcaag-tggttttcatataagctataagttgttttcatataagctatcttggaaagcttatgaaaataagctga 28689473  T
Q  316 aaacaacttatggacatgtc 335  Q
    ||||||||||||||||||||    
T  28689472 aaacaacttatggacatgtc 28689453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 35080187 - 35080151
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgttt 254  Q
    |||||||||||||| ||||||||||||||||||||||    
T  35080187 tttctataacaaaaaataaaataaagtcaaactgttt 35080151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 7274070 - 7274019
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||||||| ||| |||||||||| || ||||||||||||| ||||||    
T  7274070 ttatgtatatgttatttttataacaaaagatgaaataaagtcaaattgtttt 7274019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 15799643 - 15799694
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||||| ||||||| |||||||| |  ||||||||||||||||||||    
T  15799643 ttatgtatatgatgtttctttaacaaaaaaagaaataaagtcaaactgtttt 15799694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 27738297 - 27738228
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    |||||| ||||||| |||||||||||||||| || ||||| ||| ||||| || ||| |||||||||||||    
T  27738297 tttctacaacaaaagataaaataaagtcaaattg-ttttcatataagctataatttgttttcataagctat 27738228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 284
Target Start/End: Original strand, 48064262 - 48064327
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataag 284  Q
    |||||||| ||||| |||||||||||| ||||| ||||| |||| || || ||||||||||||||||    
T  48064262 tttctatagcaaaagataaaataaagtaaaactattttt-gtataagttataagttgatttcataag 48064327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 6265048 - 6265085
Alignment:
Q  219 ttctataacaaaatataaaataaagtcaaactgttttt 256  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  6265048 ttctataacaaaaaataaaataaagtcaaattgttttt 6265085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 335
Target Start/End: Complemental strand, 10199525 - 10199409
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatgaaaatgagctggaa 317  Q
    ||||||||||  || |||||||||||||||||| |||| ||||| | | | ||| |  |||||||||||||| |  | ||  ||||||||| ||||| ||    
T  10199525 tttctataacccaagataaaataaagtcaaactatttt-cgtataatcgataagcttttttcataagctattttagagagcttatgaaaataagctgaaa 10199427  T
Q  318 acaacttatggacatgtc 335  Q
    |||||||||| |||||||    
T  10199426 acaacttatgaacatgtc 10199409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 14737822 - 14737785
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  14737822 tttctataacaaaagataaaataaagtcaaattgtttt 14737785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 15437916 - 15437953
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  15437916 tttctataacaaaaaataaaattaagtcaaactgtttt 15437953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 17631218 - 17631181
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  17631218 tttctataacaaaagataaaataaagtctaactgtttt 17631181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 23895275 - 23895324
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtt 253  Q
    ||||||||| | | |||||||||||||| |||||||||| ||||||||||    
T  23895275 ttatgtataagctatttctataacaaaagataaaataaattcaaactgtt 23895324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 335
Target Start/End: Original strand, 25479534 - 25479650
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatgaaaatgagctggaa 317  Q
    |||||||||| ||| ||||||||| |||||| ||| || | |||  |||| |||||| ||||||||||||| ||  | ||  ||||||||| ||||| ||    
T  25479534 tttctataaccaaagataaaataacgtcaaattgtctt-catataggctataagttgttttcataagctatcctagagagcttatgaaaataagctgaaa 25479632  T
Q  318 acaacttatggacatgtc 335  Q
    |||||| ||| |||||||    
T  25479633 acaactaatgaacatgtc 25479650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 44032132 - 44032079
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||||| |  |||||||||||||||  ||||||||||||||| ||||||    
T  44032132 gtttatgtataagccgtttctataacaaaagctaaaataaagtcaaattgtttt 44032079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 4338587 - 4338639
Alignment:
Q  203 tttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||| ||| | |||| |||| || |||||||||||||||||||||||    
T  4338587 tttatgtataagttatgtctagaacagaagataaaataaagtcaaactgtttt 4338639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 6031607 - 6031559
Alignment:
Q  207 tgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||| | |||| ||||||||||||||||||||| | |||||||||||    
T  6031607 tgtataagctgttactataacaaaatataaaataatgccaaactgtttt 6031559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 10581179 - 10581124
Alignment:
Q  233 ataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctatt 289  Q
    |||||||||||||||||| |||||| | | ||||| |||||| ||||||||||||||    
T  10581179 ataaaataaagtcaaact-tttttcatttaagctataagttgttttcataagctatt 10581124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 15488893 - 15488945
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgttttt 256  Q
    ||||||||| ||||||||||| | |||| |||| ||||||||||||| |||||    
T  15488893 ttatgtataagttgtttctatgataaaagataacataaagtcaaactattttt 15488945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 17269189 - 17269272
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    ||||||||| ||| |||||| |||||||   |||||||||||||| || ||||| ||| ||| | |||||| |||||||||||||    
T  17269189 ttatgtataagttatttctagaacaaaagtgaaaataaagtcaaattg-ttttcatataagcaataagttgttttcataagctat 17269272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 21002112 - 21002144
Alignment:
Q  224 taacaaaatataaaataaagtcaaactgttttt 256  Q
    ||||| |||||||||||||||||||||||||||    
T  21002112 taacataatataaaataaagtcaaactgttttt 21002144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 332
Target Start/End: Complemental strand, 29007847 - 29007720
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctattctgcaaagaatatg 303  Q
    |||||| || ||| |||||||||||||| | ||| ||||||||||||  ||||| ||| ||||| |||||| ||||||  |||| | || ||||  |||     
T  29007847 ttatgtctaagttatttctataacaaaagaaaaattaaagtcaaact-attttcatataagctataagttgttttcatcggctactttgaaaagcttatc 29007749  T
Q  304 aaaatgagctggaaacaacttatggacat 332  Q
     |||| ||||| |||||||||||| ||||    
T  29007748 gaaataagctgaaaacaacttatgaacat 29007720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 36151637 - 36151585
Alignment:
Q  203 tttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||| | | |||| ||||||||| |||||||||||||||| ||||||    
T  36151637 tttatgtataagctatttcaataacaaaagataaaataaagtcaaattgtttt 36151585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 36641814 - 36641858
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaa 248  Q
    |||| |||| ||| |||||||||||||| ||||||||||||||||    
T  36641814 ttatatataagttatttctataacaaaagataaaataaagtcaaa 36641858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 52559943 - 52559915
Alignment:
Q  220 tctataacaaaatataaaataaagtcaaa 248  Q
    |||||||||||||||||||||||||||||    
T  52559943 tctataacaaaatataaaataaagtcaaa 52559915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 28306113 - 28306180
Alignment:
Q  220 tctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    ||||||||||||  |||||||||||||||||| ||||| ||| || ||||||||| |||||||||||||    
T  28306113 tctataacaaaaagtaaaataaagtcaaactg-ttttcatataagttacaagttgttttcataagctat 28306180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 1816540 - 1816605
Alignment:
Q  222 tataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    ||||| |||| |||||||||||||||||||||||| |||| || || |||||| |||||||||||||    
T  1816540 tataataaaagataaaataaagtcaaactgttttt-gtataagatataagttgttttcataagctat 1816605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 8007826 - 8007777
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtt 253  Q
    ||||||||| | |||||||||||||||| ||||| |||||||||||||||    
T  8007826 ttatgtataagctgtttctataacaaaagataaagtaaagtcaaactgtt 8007777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 49587033 - 49586996
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||||| |||||||||||||||||||||||    
T  49587033 tttctataacaaaagataaaataaagtcaaactgtttt 49586996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 51278274 - 51278237
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  51278274 tttctataacaaaatattaaataaagtcaaactgtttt 51278237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 249
Target Start/End: Complemental strand, 24605149 - 24605102
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaac 249  Q
    ||||||||||| ||| |||||||||||||| || ||||||||||||||    
T  24605149 gtttatgtataagttatttctataacaaaagatgaaataaagtcaaac 24605102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 37788798 - 37788883
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctatt 289  Q
    ||||||||||| ||| ||| |||||||||| ||||||||||||| || | |||| ||||| | ||| |||||| ||||||||||||||    
T  37788798 gtttatgtataagttattt-tataacaaaagataaaataaagtccaattatttt-cgtataatctataagttgttttcataagctatt 37788883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 40122883 - 40122832
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||| | | |||| ||||||||| |||||||||||||||||||||||    
T  40122883 ttatgtataagctatttcaataacaaaagataaaataaagtcaaactgtttt 40122832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 48365010 - 48364959
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||| ||| |||| ||||||||| |||||||||||||||| ||||||    
T  48365010 ttatgtataagttatttcgataacaaaagataaaataaagtcaaattgtttt 48364959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 2606405 - 2606375
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaa 248  Q
    |||||||||||||||||||||||||||||||    
T  2606405 tttctataacaaaatataaaataaagtcaaa 2606375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 12985454 - 12985403
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||||| |||||||||||||||||  |||||||||||  ||||||||||    
T  12985454 gtttatgtataagttgtttctataacaaa--ataaaataaagataaactgtttt 12985403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 24887400 - 24887331
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    |||||||||||| | ||||||||||||||||||| | ||| ||| ||||| ||| || |||||||||||||    
T  24887400 tttctataacaatagataaaataaagtcaaactg-tattcatataagctaaaagctgttttcataagctat 24887331  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 34318041 - 34318071
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaa 248  Q
    |||||||||||||||||||||||||||||||    
T  34318041 tttctataacaaaatataaaataaagtcaaa 34318071  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 2128384 - 2128331
Alignment:
Q  202 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    ||||||||||| | | |||||||||||||| |||||||||||| ||| ||||||    
T  2128384 gtttatgtataagctatttctataacaaaagataaaataaagttaaattgtttt 2128331  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 38462234 - 38462271
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  38462234 tttctataccaaaagataaaataaagtcaaactgtttt 38462271  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 44284175 - 44284138
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  44284175 tttctataacaaaaaataaaacaaagtcaaactgtttt 44284138  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 13481253 - 13481285
Alignment:
Q  223 ataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||||||||||||||||||||||| ||||    
T  13481253 ataacaaaatataaaataaagtcaaactatttt 13481285  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 20267108 - 20267140
Alignment:
Q  218 tttctataacaaaatataaaataaagtcaaact 250  Q
    |||||||||||||| ||||||||||||||||||    
T  20267108 tttctataacaaaagataaaataaagtcaaact 20267140  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 31337516 - 31337480
Alignment:
Q  220 tctataacaaaatataaaataaagtcaaactgttttt 256  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  31337516 tctaaaacaaaagataaaataaagtcaaactgttttt 31337480  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 42808930 - 42808970
Alignment:
Q  216 tgtttctataacaaaatataaaataaagtcaaactgttttt 256  Q
    |||||||||||||||| |||||||||||| ||| |||||||    
T  42808930 tgtttctataacaaaagataaaataaagttaaattgttttt 42808970  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 27515 - 27598
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttttcgtatgagctacaagttgatttcataagctat 288  Q
    ||||||||| ||| ||||||||||| || |||||||||||||||| || ||||| ||| | ||| |||||| |||||||| ||||    
T  27515 ttatgtataagttatttctataacagaagataaaataaagtcaaattg-ttttcatataaactataagttgttttcataaactat 27598  T

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Target: scaffold0590 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 1205 - 1159
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaact 250  Q
    ||||||||| | | |||||||||||||| ||||||||||||||||||    
T  1205 ttatgtataagctatttctataacaaaagataaaataaagtcaaact 1159  T

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Target: scaffold0275 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 2770 - 2816
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaact 250  Q
    ||||||||| | | |||||||||||||| ||||||||||||||||||    
T  2770 ttatgtataagctatttctataacaaaagataaaataaagtcaaact 2816  T

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Target: scaffold0103 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 51508 - 51558
Alignment:
Q  205 tatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 255  Q
    |||||||| ||| ||| ||||||||||||||||||||||| ||| ||||||    
T  51508 tatgtataagttatttttataacaaaatataaaataaagttaaattgtttt 51558  T

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Target: scaffold0508 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 9906 - 9862
Alignment:
Q  204 ttatgtatatgttgtttctataacaaaatataaaataaagtcaaa 248  Q
    ||||||||| ||| |||||||||||||| ||||||| ||||||||    
T  9906 ttatgtataagttatttctataacaaaaaataaaattaagtcaaa 9862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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