View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_high_17 (Length: 317)
Name: NF7779_high_17
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 28270837 - 28270610
Alignment:
| Q |
10 |
aagaatatgtaagagaaaagaagagcacgtgagaaagaacatagttagtgatcaaaattgaagaactttgggagtgtagaagttgaaaagcattctgcag |
109 |
Q |
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| T |
28270837 |
aagaaaatgtaagagaaaagaagagcacgtgagaaagaacagagttagtgatcaaaattgaagaactttgggagtgtagaagttgaaaagcattctgcag |
28270738 |
T |
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| Q |
110 |
aacagttcaccgtttctctccttgtcatgattataaccatgcctgtatcatcgaatggtggtcggcctgcccttcctgacatctgtacaaataaaaactt |
209 |
Q |
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| T |
28270737 |
aacagttcaccgtttctctccttgtcatgattataaccatgcctgtatcatcgaatggtggtcggcctgcccttcctgacatctgtac-aataaaaactt |
28270639 |
T |
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| Q |
210 |
tagcccaaaatgatatattaacaatcaaa |
238 |
Q |
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| T |
28270638 |
tagcccaaaatgatatattaacaatcaaa |
28270610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 28270612 - 28270571
Alignment:
| Q |
263 |
aaatactcaagctttgatttgtcgggtgggtcactactcaag |
304 |
Q |
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| T |
28270612 |
aaatactcaagctttgatttgtcgggtgggtcactactcaag |
28270571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 28270578 - 28270538
Alignment:
| Q |
266 |
tactcaagctttgatttgtcgggtgggtcactactcaagtt |
306 |
Q |
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| T |
28270578 |
tactcaagctttgatttgtcgggtgggtcactactcaagtt |
28270538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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