View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_high_2 (Length: 679)
Name: NF7779_high_2
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_high_2 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 5e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 8826313 - 8826159
Alignment:
| Q |
20 |
gtacacgtaaacaacacaagcaaaggtaaatatgcacatgccccactgaaaatattacaagaagatttgaatgtcaaaatataccacaatttgaagttga |
119 |
Q |
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| T |
8826313 |
gtacacgttaatagcacaagcaaaggtaaatatgcacatgccccactgaaaatgttacaagaagatttgaatatcaaaatataccacaatttgaagttga |
8826214 |
T |
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| Q |
120 |
tgataaagcttaccatcaagttatatcaaaaggcactagaaaagctcagaaagat |
174 |
Q |
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| T |
8826213 |
tgataaagcttaccatcaagttatatcaaaaggcactagaaaagctcagaaagat |
8826159 |
T |
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Target: scaffold0066 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 390 - 493
Target Start/End: Complemental strand, 38327 - 38224
Alignment:
| Q |
390 |
gcaacctttacctggtccaattggacaagagggaaacatcacactcgaagaagacttgatagagcaatttgtaatcaagactagttcaatgcttgcaaca |
489 |
Q |
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| T |
38327 |
gcaacttttacctggtcaaatggaagaaggggtaaatttcacattcaaagaagacttgatagagccatatgtaatcaagaatggttcaatgcttgcaact |
38228 |
T |
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| Q |
490 |
tggt |
493 |
Q |
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| T |
38227 |
tggt |
38224 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 488
Target Start/End: Original strand, 12301756 - 12301854
Alignment:
| Q |
390 |
gcaacctttacctggtccaattggacaagagggaaacatcacactcgaagaagacttgatagagcaatttgtaatcaagactagttcaatgcttgcaac |
488 |
Q |
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| T |
12301756 |
gcaacttttacctggtcaaatggaagaaggggtaaatttcacattcaaagaagacttgatagagccatatgtaatcaagaatggttcaatgcttgcaac |
12301854 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 437 - 469
Target Start/End: Original strand, 19571388 - 19571420
Alignment:
| Q |
437 |
aagaagacttgatagagcaatttgtaatcaaga |
469 |
Q |
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| T |
19571388 |
aagaagacttgatagagaaatttgtaatcaaga |
19571420 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 428 - 468
Target Start/End: Original strand, 16487150 - 16487190
Alignment:
| Q |
428 |
tcacactcgaagaagacttgatagagcaatttgtaatcaag |
468 |
Q |
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| T |
16487150 |
tcacactcaaaggagacttgatagatcaatttgtaatcaag |
16487190 |
T |
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