View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_high_20 (Length: 300)
Name: NF7779_high_20
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 35072345 - 35072626
Alignment:
| Q |
19 |
ctatctcagttttcagccgaccaattacaactttccactaaagacataaaaagcaacaatattgttgaaccagaaagccnnnnnnnnnnnn--------- |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35072345 |
ctatctcagttttcagccgaccaattacaactttccactaaagacataaaaagcaacaatattgttgaaccacaaagccaaaaaaataaaaaataaaaaa |
35072444 |
T |
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| Q |
110 |
caggccaatatgtcatagtgaacacaactactaggtttcttacccaaattgttatagcaaacatttttggtggtatttctgatttttgtttacgttgcaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072445 |
caggccaatatgtcatagtgaacacaactactaggtttcttacccaaattgttatagcaaacatttttggtggtatttctgatttttgtttacgttgcaa |
35072544 |
T |
|
| Q |
210 |
attctatcctcaagctaagcaagttgtcatgatgctttactttcctcatacgttcatcgtcattatcaatcactagtattat |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35072545 |
attctatcctcaagctaagcaagttgtcatgatgctttactttcctcatacgttcatcgtcattatcaatcacttgtattat |
35072626 |
T |
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