View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7779_high_23 (Length: 254)

Name: NF7779_high_23
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7779_high_23
NF7779_high_23
[»] scaffold0470 (1 HSPs)
scaffold0470 (17-246)||(860-1089)
[»] chr8 (3 HSPs)
chr8 (17-246)||(6611572-6611801)
chr8 (17-49)||(40028588-40028620)
chr8 (17-49)||(45425678-45425710)
[»] scaffold0003 (1 HSPs)
scaffold0003 (17-51)||(252540-252574)
[»] chr7 (3 HSPs)
chr7 (17-51)||(27921065-27921099)
chr7 (17-51)||(7457439-7457473)
chr7 (17-51)||(29835432-29835466)
[»] chr4 (6 HSPs)
chr4 (17-51)||(35380350-35380384)
chr4 (17-49)||(41711473-41711505)
chr4 (17-51)||(32469965-32469999)
chr4 (17-50)||(44536213-44536246)
chr4 (17-49)||(43902326-43902358)
chr4 (19-51)||(54123711-54123743)
[»] chr3 (3 HSPs)
chr3 (17-49)||(45811727-45811759)
chr3 (17-49)||(43719338-43719370)
chr3 (17-49)||(45710922-45710954)
[»] scaffold0110 (1 HSPs)
scaffold0110 (17-51)||(1774-1808)
[»] chr6 (3 HSPs)
chr6 (19-49)||(7764251-7764281)
chr6 (19-52)||(7072229-7072262)
chr6 (17-49)||(6802003-6802035)
[»] chr1 (3 HSPs)
chr1 (17-51)||(36701991-36702025)
chr1 (17-51)||(36718095-36718129)
chr1 (17-49)||(917096-917128)
[»] chr5 (1 HSPs)
chr5 (19-51)||(3348136-3348168)


Alignment Details
Target: scaffold0470 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 1089 - 860
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaattagtggtatcatattcttaaaagtaataacatatgggctctaagttggggccagggaagatatacaaat 116  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  1089 tgattaattatgttgatttcaatggtaaaattagtggtatcatattcttaaaagtaataacatatggactctaagttggggccagggaagatatacaaac 990  T
Q  117 tggttgcctatagagatgcaaattggtgtggagacacaggggatagaaagtcgattgttggctacctattcttctatgatggagcaccaatatcgtggaa 216  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  989 tggttgcctaaagagatgcaaattggtgtggagacacgggggatagaaagtcgattgttggctacatattcttctatgatggagcatcaatatcgtggaa 890  T
Q  217 caaataataaattacaagtgagtgatgatg 246  Q
    ||||||| ||||||||||||||||||||||    
T  889 caaataacaaattacaagtgagtgatgatg 860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 6611801 - 6611572
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaattagtggtatcatattcttaaaagtaataacatatgggctctaagttggggccagggaagatatacaaat 116  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  6611801 tgattaattatgttgatttcaatggtaaaattagtggtatcatattcttaaaagtaataacatatggactctaagttggggccagggaagatatacaaac 6611702  T
Q  117 tggttgcctatagagatgcaaattggtgtggagacacaggggatagaaagtcgattgttggctacctattcttctatgatggagcaccaatatcgtggaa 216  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  6611701 tggttgcctaaagagatgcaaattggtgtggagacacgggggatagaaagtcgattgttggctacatattcttctatgatggagcatcaatatcgtggaa 6611602  T
Q  217 caaataataaattacaagtgagtgatgatg 246  Q
    ||||||| ||||||||||||||||||||||    
T  6611601 caaataacaaattacaagtgagtgatgatg 6611572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 40028620 - 40028588
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaatta 49  Q
    ||||||||||||||||||| |||||||||||||    
T  40028620 tgattaattatgttgatttcaatggtaaaatta 40028588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 45425678 - 45425710
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaatta 49  Q
    ||||||||| |||||||||||||||||||||||    
T  45425678 tgattaattgtgttgattttaatggtaaaatta 45425710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 252540 - 252574
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaattagt 51  Q
    |||||||||||||||||||||||||||||||||||    
T  252540 tgattaattatgttgattttaatggtaaaattagt 252574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 27921099 - 27921065
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaattagt 51  Q
    |||||||||||||||||||||||||||||||||||    
T  27921099 tgattaattatgttgattttaatggtaaaattagt 27921065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 7457439 - 7457473
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaattagt 51  Q
    ||||||||||||||||||| |||||||||||||||    
T  7457439 tgattaattatgttgatttcaatggtaaaattagt 7457473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 29835432 - 29835466
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaattagt 51  Q
    ||||||||||||||||||| |||||||||||||||    
T  29835432 tgattaattatgttgatttaaatggtaaaattagt 29835466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 35380350 - 35380384
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaattagt 51  Q
    |||||||||||||||||||||||||||||||||||    
T  35380350 tgattaattatgttgattttaatggtaaaattagt 35380384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 41711473 - 41711505
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaatta 49  Q
    |||||||||||||||||||||||||||||||||    
T  41711473 tgattaattatgttgattttaatggtaaaatta 41711505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 32469965 - 32469999
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaattagt 51  Q
    ||||||||| |||||||||||||||||||||||||    
T  32469965 tgattaattgtgttgattttaatggtaaaattagt 32469999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 44536213 - 44536246
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaattag 50  Q
    ||||||||| ||||||||||||||||||||||||    
T  44536213 tgattaattgtgttgattttaatggtaaaattag 44536246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 43902358 - 43902326
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaatta 49  Q
    |||||||||||||||||||||||| ||||||||    
T  43902358 tgattaattatgttgattttaatgataaaatta 43902326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 54123743 - 54123711
Alignment:
Q  19 attaattatgttgattttaatggtaaaattagt 51  Q
    |||||||||||||||||||||| ||||||||||    
T  54123743 attaattatgttgattttaatgataaaattagt 54123711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 45811759 - 45811727
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaatta 49  Q
    |||||||||||||||||||||||||||||||||    
T  45811759 tgattaattatgttgattttaatggtaaaatta 45811727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 43719370 - 43719338
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaatta 49  Q
    ||||||||| |||||||||||||||||||||||    
T  43719370 tgattaattgtgttgattttaatggtaaaatta 43719338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 45710954 - 45710922
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaatta 49  Q
    |||||||||||||||||||| ||||||||||||    
T  45710954 tgattaattatgttgattttgatggtaaaatta 45710922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 1808 - 1774
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaattagt 51  Q
    |||||||||||||||||||| ||||||||||||||    
T  1808 tgattaattatgttgattttgatggtaaaattagt 1774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 7764251 - 7764281
Alignment:
Q  19 attaattatgttgattttaatggtaaaatta 49  Q
    |||||||||||||||||||||||||||||||    
T  7764251 attaattatgttgattttaatggtaaaatta 7764281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 7072262 - 7072229
Alignment:
Q  19 attaattatgttgattttaatggtaaaattagtg 52  Q
    ||||||| ||||||||||||||||||||||||||    
T  7072262 attaattgtgttgattttaatggtaaaattagtg 7072229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 6802035 - 6802003
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaatta 49  Q
    |||||||||||||||||||| ||||||||||||    
T  6802035 tgattaattatgttgattttgatggtaaaatta 6802003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 36702025 - 36701991
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaattagt 51  Q
    ||||||||||||||||||| |||||||||||||||    
T  36702025 tgattaattatgttgatttcaatggtaaaattagt 36701991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 36718129 - 36718095
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaattagt 51  Q
    ||||||||||||||||||| |||||||||||||||    
T  36718129 tgattaattatgttgatttcaatggtaaaattagt 36718095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 917128 - 917096
Alignment:
Q  17 tgattaattatgttgattttaatggtaaaatta 49  Q
    ||||||||||||||||||| |||||||||||||    
T  917128 tgattaattatgttgatttaaatggtaaaatta 917096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 3348136 - 3348168
Alignment:
Q  19 attaattatgttgattttaatggtaaaattagt 51  Q
    |||||||||||||||||| ||||||||||||||    
T  3348136 attaattatgttgattttgatggtaaaattagt 3348168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University