View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_high_25 (Length: 251)
Name: NF7779_high_25
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 25047242 - 25047000
Alignment:
| Q |
1 |
atattacttccttggatattgctgattcgtagtaaccattataaatttctcatcaactatttgcagaaggaaagcttagtggaggtgtaaaccatggagg |
100 |
Q |
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| T |
25047242 |
atattacttccttggatattgctgattcgtagtaaccattataaatttctcatcaattatttgcagaaggaaagcttagtggaggtgtaaaccatggagg |
25047143 |
T |
|
| Q |
101 |
gataaactactacaacaacctcatcgatgaactattggctaatggtaaagattcaccaatatttattaatttaagttctcaaa-ttattgcattagaata |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
25047142 |
aataaactactacaacaacctcatcgatgaactattggctaatggtaaagattcaccaatatttattaatttaagttctcaaatttattgtattagaata |
25047043 |
T |
|
| Q |
200 |
gtatccatgtggttgttaatcataagtaatcattgagaataat |
242 |
Q |
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| T |
25047042 |
gtatccatgtggttgttaatcataagtaatcattgagaataat |
25047000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 24986764 - 24986653
Alignment:
| Q |
56 |
actatttgcagaaggaaagcttagtggaggtgtaaaccatggagggataaactactacaacaacctcatcgatgaactattggctaatggtaaagattca |
155 |
Q |
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| T |
24986764 |
actatttgcagaaggaaagcttagtggaggtgtaaaccaagagggaataaactactacaacaacctcatcgatgaactattggctaatggtaaagattca |
24986665 |
T |
|
| Q |
156 |
ccaatatttatt |
167 |
Q |
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|||| |||||| |
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| T |
24986664 |
tcaatttttatt |
24986653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 25000322 - 25000479
Alignment:
| Q |
9 |
tccttggatattgctgattcgtagtaaccattataaatttctcatcaactatttgcagaaggaaagcttagtggaggtgtaaaccatggaggg-ataaac |
107 |
Q |
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| T |
25000322 |
tccttgtatattggtgatttatagtatccatcataaatttcttatcaactatttgcagaaggaaagtttagtggaggtgtaaacca-ggagggaataaac |
25000420 |
T |
|
| Q |
108 |
tactacaacaacctcatcgatgaactattggctaatggtaaagattcaccaatatttatt |
167 |
Q |
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| T |
25000421 |
tactacaacgacctcatcaacgaagtattggctaaaggtaaa-attcatcaaaatttatt |
25000479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 25189751 - 25189714
Alignment:
| Q |
111 |
tacaacaacctcatcgatgaactattggctaatggtaa |
148 |
Q |
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| T |
25189751 |
tacaacaacctcatcaacgaactattggctaatggtaa |
25189714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 29422610 - 29422645
Alignment:
| Q |
56 |
actatttgcagaaggaaagcttagtggaggtgtaaa |
91 |
Q |
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| T |
29422610 |
actaattgcagaaggaaagcttagtggaggtgtaaa |
29422645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 42167772 - 42167691
Alignment:
| Q |
65 |
agaaggaaagcttagtggaggtgtaaaccatggagggataaactactacaacaacctcatcgatgaactattggctaatggt |
146 |
Q |
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|||||||||||||| |||||| ||||||| | ||| || || || ||||||||||||||| ||||| | ||| |||||||| |
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| T |
42167772 |
agaaggaaagcttaagggaggtataaaccaagaaggaatcaaatattacaacaacctcatcaatgaattgttgactaatggt |
42167691 |
T |
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