View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_high_29 (Length: 242)
Name: NF7779_high_29
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_high_29 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 48296033 - 48296257
Alignment:
| Q |
18 |
ctaagtctgaattgaatttacacaatagcttattggtcacattgtagacaaggtcgtgcactaggaacattcacgtatcagaagttggtgctcaaaatct |
117 |
Q |
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| T |
48296033 |
ctaagtctgaattgaatttacacaatagcttattggtcacattgtagacaaggtcgtgcactaggaacattcacgtatcagaagttggtgctcaaaatct |
48296132 |
T |
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| Q |
118 |
gcaaagagatcattcagtataacaacctttgcataaacttgatgaataagaagtgcattgtcgtccacactcgcaacaatcctgctggaatctctatata |
217 |
Q |
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| T |
48296133 |
gcaaagagatcattcagtataacaacctttgcatcaacttgatgaataagaagtgcattgtcgtccacactcgcaacaatcctgctggaatctctatata |
48296232 |
T |
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| Q |
218 |
cgtaactatttcatggctacacaaa |
242 |
Q |
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| T |
48296233 |
cgtaactatttcatggctacacaaa |
48296257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 48307348 - 48307572
Alignment:
| Q |
18 |
ctaagtctgaattgaatttacacaatagcttattggtcacattgtagacaaggtcgtgcactaggaacattcacgtatcagaagttggtgctcaaaatct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48307348 |
ctaagtctgaattgaatttacacaatagcttattggtcacattgtagacaaggtcgtgcactaggaacattcacgtatcagaagttggtgctcaaaatct |
48307447 |
T |
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| Q |
118 |
gcaaagagatcattcagtataacaacctttgcataaacttgatgaataagaagtgcattgtcgtccacactcgcaacaatcctgctggaatctctatata |
217 |
Q |
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| T |
48307448 |
gcaaagagatcattcagtataacaacctttgcatcaacttgatgaataagaagtgcattgttgtccacactcgcaacaatcctgctggaatctctatata |
48307547 |
T |
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| Q |
218 |
cgtaactatttcatggctacacaaa |
242 |
Q |
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| T |
48307548 |
cgtaactatttcatggctacacaaa |
48307572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 37295028 - 37295123
Alignment:
| Q |
113 |
aatctgcaaagagatcattcagtataacaacctttgcataaacttgatgaataagaagtgcattgtcgtccacactcgcaacaatcctgctggaat |
208 |
Q |
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| T |
37295028 |
aatctgcaaagagatcataaagtatgacaacctttgcatcaacttgatgaataagaagtacattgtcgaccacactcccagcaatcctgctggaat |
37295123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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