View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7779_high_3 (Length: 577)

Name: NF7779_high_3
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7779_high_3
NF7779_high_3
[»] scaffold0713 (1 HSPs)
scaffold0713 (475-572)||(3511-3608)
[»] chr1 (3 HSPs)
chr1 (475-572)||(14648681-14648778)
chr1 (475-572)||(14658471-14658568)
chr1 (491-571)||(17654877-17654956)
[»] chr6 (20 HSPs)
chr6 (133-265)||(31290833-31290965)
chr6 (475-572)||(27525642-27525739)
chr6 (190-334)||(26629201-26629346)
chr6 (190-334)||(26735177-26735322)
chr6 (19-112)||(26964088-26964181)
chr6 (19-112)||(26650847-26650940)
chr6 (19-112)||(26756815-26756908)
chr6 (155-261)||(26963980-26964086)
chr6 (155-261)||(26650739-26650845)
chr6 (155-261)||(26756707-26756813)
chr6 (132-201)||(27652757-27652826)
chr6 (98-154)||(27422832-27422888)
chr6 (132-191)||(26640274-26640331)
chr6 (132-191)||(26746240-26746297)
chr6 (81-120)||(26629362-26629401)
chr6 (81-120)||(26735338-26735377)
chr6 (132-174)||(27506761-27506803)
chr6 (209-253)||(26964723-26964767)
chr6 (30-127)||(27606872-27606969)
chr6 (274-334)||(27422971-27423031)
[»] chr5 (1 HSPs)
chr5 (475-572)||(27199781-27199878)
[»] scaffold0003 (2 HSPs)
scaffold0003 (98-154)||(64475-64531)
scaffold0003 (274-334)||(64332-64392)
[»] chr4 (3 HSPs)
chr4 (131-182)||(18719305-18719354)
chr4 (132-182)||(18674703-18674751)
chr4 (135-182)||(18692787-18692832)


Alignment Details
Target: scaffold0713 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 475 - 572
Target Start/End: Original strand, 3511 - 3608
Alignment:
Q  475 gatgtagacaaaacatggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttcgtctttgttctttcatatcac 572  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  3511 gatgtagacaaaacatggaagctactagatttttcccacacacccttttctcattctctttcccgtattcctctttcctctttgttctttcatgtcac 3608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 8e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 475 - 572
Target Start/End: Original strand, 14648681 - 14648778
Alignment:
Q  475 gatgtagacaaaacatggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttcgtctttgttctttcatatcac 572  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  14648681 gatgtagacaaaacatggaagctactagatttttcccacacacccttttctcattctctttcccgtattcctctttcctctttgttctttcatgtcac 14648778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 475 - 572
Target Start/End: Original strand, 14658471 - 14658568
Alignment:
Q  475 gatgtagacaaaacatggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttcgtctttgttctttcatatcac 572  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  14658471 gatgtagacaaaacatggaagctactagatttttcccacacacccttttctcattctctttcccgtattcctctttcctctttgttctttcatgtcac 14658568  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 491 - 571
Target Start/End: Complemental strand, 17654956 - 17654877
Alignment:
Q  491 ggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttcgtctttgttctttcatatca 571  Q
    ||||||||||||||||||||| |||||||||| ||| |||||||||||||||  ||||||| ||| |||||| ||| ||||    
T  17654956 ggaagctactagatttttccctcacacccttt-ctctttctctttcccgtatcactctttcctctctgttctctcacatca 17654877  T

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Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 133 - 265
Target Start/End: Complemental strand, 31290965 - 31290833
Alignment:
Q  133 tggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttatacc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||| ||| | |||||||||||    
T  31290965 tggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttccatttgccaaatcaaaacaaaatttgataggaaaaaagcttctttatacc 31290866  T
Q  233 ataaagttcatacatataaatttttccacaaca 265  Q
    ||  ||||||||||||||||| || ||||||||    
T  31290865 atctagttcatacatataaatgttcccacaaca 31290833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 475 - 572
Target Start/End: Original strand, 27525642 - 27525739
Alignment:
Q  475 gatgtagacaaaacatggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttcgtctttgttctttcatatcac 572  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  27525642 gatgtacacaaaacatggaagctactagatttttcccacacacccttttctcattctctttcccgtattcctctttcctctttgttctttcatgtcac 27525739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 190 - 334
Target Start/End: Complemental strand, 26629346 - 26629201
Alignment:
Q  190 caaatcgaaacataatttaataggagaaaggt-ttctttataccataaagttcatacatataaatttttccacaacaaatacttcttttgcaatttgtaa 288  Q
    |||||| ||| | ||||| |||||| |||||  ||||||||||||| |||||||||||||||||| |||||| |||| ||| || ||||||||||| |||    
T  26629346 caaatcaaaagaaaatttgataggaaaaaggccttctttataccatcaagttcatacatataaatgtttccaaaacatatattttttttgcaatttttaa 26629247  T
Q  289 ttctctgaagtatctatttgactgtgatagaagatgaagtttgtat 334  Q
    |||| |||| ||||||||| | ||||||| |||||||| |||||||    
T  26629246 ttctttgaattatctatttcagtgtgatataagatgaaatttgtat 26629201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 190 - 334
Target Start/End: Complemental strand, 26735322 - 26735177
Alignment:
Q  190 caaatcgaaacataatttaataggagaaaggt-ttctttataccataaagttcatacatataaatttttccacaacaaatacttcttttgcaatttgtaa 288  Q
    |||||| ||| | ||||| |||||| |||||  ||||||||||||| |||||||||||||||||| |||||| |||| ||| || ||||||||||| |||    
T  26735322 caaatcaaaagaaaatttgataggaaaaaggccttctttataccatcaagttcatacatataaatgtttccaaaacatatattttttttgcaatttttaa 26735223  T
Q  289 ttctctgaagtatctatttgactgtgatagaagatgaagtttgtat 334  Q
    |||| |||| ||||||||| | ||||||| |||||||| |||||||    
T  26735222 ttctttgaattatctatttcagtgtgatataagatgaaatttgtat 26735177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 26964181 - 26964088
Alignment:
Q  19 gttaattcatgagatacattaaagagaaacaaagtaccaatttgtaagacttcaaaatgaaatggaagaaaaaatatatggagtagcagataaa 112  Q
    ||||||||| ||||||||||||||||||||  | |||||  ||||||||||||| || |||||||||||||||||||| |||||||||||||||    
T  26964181 gttaattcacgagatacattaaagagaaacggattaccagattgtaagacttcacaaagaaatggaagaaaaaatataaggagtagcagataaa 26964088  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 26650940 - 26650847
Alignment:
Q  19 gttaattcatgagatacattaaagagaaacaaagtaccaatttgtaagacttcaaaatgaaatggaagaaaaaatatatggagtagcagataaa 112  Q
    ||||||||| ||||||||||||||||||||  ||||||| |||||||||||||| || || | ||||||||||||||| ||||||| |||||||    
T  26650940 gttaattcacgagatacattaaagagaaacggagtaccagtttgtaagacttcacaaagataaggaagaaaaaatataaggagtagaagataaa 26650847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 26756908 - 26756815
Alignment:
Q  19 gttaattcatgagatacattaaagagaaacaaagtaccaatttgtaagacttcaaaatgaaatggaagaaaaaatatatggagtagcagataaa 112  Q
    ||||||||| ||||||||||||||||||||  ||||||| |||||||||||||| || || | ||||||||||||||| ||||||| |||||||    
T  26756908 gttaattcacgagatacattaaagagaaacggagtaccagtttgtaagacttcacaaagataaggaagaaaaaatataaggagtagaagataaa 26756815  T

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Target: chr6; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 26964086 - 26963980
Alignment:
Q  155 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttataccataaagttcatacatataaatt 254  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| |||||| ||||| || | |||||||| |||||||||||||||||      
T  26964086 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgataggaaaaaggcttttgtataccatcaagttcatacatataaacg 26963987  T
Q  255 tttccac 261  Q
    |||||||    
T  26963986 tttccac 26963980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 26650845 - 26650739
Alignment:
Q  155 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttataccataaagttcatacatataaatt 254  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| || ||| ||||| |||| |||||||| || ||||||||||||||      
T  26650845 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgattggaaaaaggcttctgtataccatcaatttcatacatataaacg 26650746  T
Q  255 tttccac 261  Q
    |||||||    
T  26650745 tttccac 26650739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 26756813 - 26756707
Alignment:
Q  155 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttataccataaagttcatacatataaatt 254  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| || ||| ||||| |||| |||||||| || ||||||||||||||      
T  26756813 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgattggaaaaaggcttctgtataccatcaatttcatacatataaacg 26756714  T
Q  255 tttccac 261  Q
    |||||||    
T  26756713 tttccac 26756707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 27652757 - 27652826
Alignment:
Q  132 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgccaaatcgaaaca 201  Q
    ||||||| | |||||||||| ||||||||||||||||||||||||||||||  ||||||| ||| |||||    
T  27652757 ttggaagcataaaaccaaaattttgagttatgaaacgaaattctccacttccatttgccagatcaaaaca 27652826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 27422832 - 27422888
Alignment:
Q  98 ggagtagcagataaaagtaaattaattttttctattggaagtacaaaaccaaaactt 154  Q
    ||||||||||||  |||||||||||||||| |||||| |||||||||||||||||||    
T  27422832 ggagtagcagatcgaagtaaattaatttttcctattgtaagtacaaaaccaaaactt 27422888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 26640331 - 26640274
Alignment:
Q  132 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgcca 191  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| |||  |||||||    
T  26640331 ttggaagtacaaaaccaaaact--gagttatgaaacgaaattctccatttccatttgcca 26640274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 26746297 - 26746240
Alignment:
Q  132 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgcca 191  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| |||  |||||||    
T  26746297 ttggaagtacaaaaccaaaact--gagttatgaaacgaaattctccatttccatttgcca 26746240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 26629401 - 26629362
Alignment:
Q  81 tggaagaaaaaatatatggagtagcagataaaagtaaatt 120  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  26629401 tggaagaaaaaatatatggagtagcagataaaaggaaatt 26629362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 26735377 - 26735338
Alignment:
Q  81 tggaagaaaaaatatatggagtagcagataaaagtaaatt 120  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  26735377 tggaagaaaaaatatatggagtagcagataaaaggaaatt 26735338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 27506761 - 27506803
Alignment:
Q  132 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattc 174  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  27506761 ttggaagtacaaaaccaaaactttgagctatgaaacgatattc 27506803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 26964767 - 26964723
Alignment:
Q  209 ataggagaaaggtttctttataccataaagttcatacatataaat 253  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||    
T  26964767 ataggaaaaaggcttctttataccatcaagttcatacatataaat 26964723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 27606872 - 27606969
Alignment:
Q  30 agatacattaaagagaaacaaagtaccaatttgtaag-acttcaaaatgaaatggaagaaaaaatatatggagtagcagataaaagtaaattaattttt 127  Q
    ||||||||||||||||||    | ||||||||||||| |||| ||||| |||| |||||||||| |||   ||||| ||||||||||| ||||||||||    
T  27606872 agatacattaaagagaaatgtcgaaccaatttgtaagaacttaaaaat-aaatagaagaaaaaagataacaagtaggagataaaagtatattaattttt 27606969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 27422971 - 27423031
Alignment:
Q  274 ttttgcaatttgtaattctctgaagtatctatttgactgtgatagaagatgaagtttgtat 334  Q
    ||||||||||| |||| |  | || ||||||||| ||||||||| ||||||||||||||||    
T  27422971 ttttgcaatttttaatcccttaaactatctatttaactgtgatataagatgaagtttgtat 27423031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 475 - 572
Target Start/End: Complemental strand, 27199878 - 27199781
Alignment:
Q  475 gatgtagacaaaacatggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttcgtctttgttctttcatatcac 572  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  27199878 gatgtagacaaaacacggaagctactagatttttcccacacacccttttctcattctctttcccgtattcctctttcctctctgttctttcatgtcac 27199781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 64531 - 64475
Alignment:
Q  98 ggagtagcagataaaagtaaattaattttttctattggaagtacaaaaccaaaactt 154  Q
    ||||||||||||  |||||||||||||||| |||||| |||||||||||||||||||    
T  64531 ggagtagcagatcgaagtaaattaatttttcctattgtaagtacaaaaccaaaactt 64475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 64392 - 64332
Alignment:
Q  274 ttttgcaatttgtaattctctgaagtatctatttgactgtgatagaagatgaagtttgtat 334  Q
    ||||||||||| |||| |  | || ||||||||| ||||||||| ||||||||||||||||    
T  64392 ttttgcaatttttaatcccttaaactatctatttaactgtgatataagatgaagtttgtat 64332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 18719305 - 18719354
Alignment:
Q  131 attggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttc 182  Q
    |||||||||||||||||||||||  || ||||||||||||||||||||||||    
T  18719305 attggaagtacaaaaccaaaact--gacttatgaaacgaaattctccacttc 18719354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 18674703 - 18674751
Alignment:
Q  132 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttc 182  Q
    |||||||||||||||||||||  ||| |||||||| |||||||||||||||    
T  18674703 ttggaagtacaaaaccaaaac--tgatttatgaaatgaaattctccacttc 18674751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 18692787 - 18692832
Alignment:
Q  135 gaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttc 182  Q
    |||||||||||||||||||  || |||||||| |||||||||||||||    
T  18692787 gaagtacaaaaccaaaact--gatttatgaaatgaaattctccacttc 18692832  T

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