View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7779_high_31 (Length: 240)

Name: NF7779_high_31
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7779_high_31
NF7779_high_31
[»] chr4 (10 HSPs)
chr4 (1-223)||(25047227-25047449)
chr4 (12-219)||(25000106-25000319)
chr4 (12-159)||(24986821-24986969)
chr4 (51-113)||(4600902-4600964)
chr4 (27-112)||(25180925-25181010)
chr4 (45-112)||(25169155-25169222)
chr4 (45-112)||(25252032-25252099)
chr4 (51-113)||(25018276-25018338)
chr4 (51-113)||(25039387-25039449)
chr4 (51-112)||(4625050-4625111)
[»] chr5 (1 HSPs)
chr5 (29-112)||(30360258-30360341)
[»] chr2 (4 HSPs)
chr2 (45-112)||(42157384-42157451)
chr2 (45-112)||(42289974-42290041)
chr2 (51-113)||(18803534-18803596)
chr2 (49-112)||(42167895-42167958)
[»] chr6 (1 HSPs)
chr6 (31-112)||(29405630-29405711)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25047227 - 25047449
Alignment:
Q  1 tccaaggaagtaatattaacaaaatatgacttacttggtaagactctagaccaagaaatggagaatctataagcatccatattcatatacttcatgattc 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25047227 tccaaggaagtaatattaacaaaatacgacttacttggtaagactctagaccaagaaatggagaatctataagcatccatattcatatacttcatgattc 25047326  T
Q  101 caacatcttcctaaaatcagtaaaccactctatcatgactctaaatatatgtcacatttctctatacatttgcaaaactataaattggaccataccttgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25047327 caacatcttcctaaaatcagtaaaccactctatcatgactctaaatatatgtcacagttctctatacatttgcaaaactataaattggaccataccttgt 25047426  T
Q  201 accgactatatgagtcgtcagct 223  Q
    |||||||||||||||||||||||    
T  25047427 accgactatatgagtcgtcagct 25047449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 25000319 - 25000106
Alignment:
Q  12 aatattaacaaaa-tatgacttacttggtaagactctagaccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttc 110  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||||| || |||||||||||||||||||||| || |||||||||||||| ||||||    
T  25000319 aatattaacaaaaatatgacttacttggtagcactctagaccaagaaattgaaaatctataagcatccatattcaaatccttcatgattccaatatcttc 25000220  T
Q  111 ctaaaatcagtaaaccactctatcatgactctaaatatatgtcacat-----ttctctatacatttgcaaaactataaattggaccataccttgtaccga 205  Q
    |||||||   |||| || ||| ||| |||||||| |||| || ||||     || | ||||| | |||||||||| || |||||||||||||||||||||    
T  25000219 ctaaaatacataaagcagtctttcaggactctaagtataagttacatttgcattttatatacctctgcaaaactacaatttggaccataccttgtaccga 25000120  T
Q  206 ctatatgagtcgtc 219  Q
      ||| ||||||||    
T  25000119 tgatacgagtcgtc 25000106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 24986821 - 24986969
Alignment:
Q  12 aatattaacaaaa-tatgacttacttggtaagactctagaccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttc 110  Q
    ||||||||||||| || |||||||||||||  ||||||||||||| |||||| ||||| |||||||||||||||| || ||| |||||||||| ||||||    
T  24986821 aatattaacaaaaataagacttacttggtagcactctagaccaagcaatggaaaatctgtaagcatccatattcaaatcctttatgattccaatatcttc 24986920  T
Q  111 ctaaaatcagtaaaccactctatcatgactctaaatatatgtcacattt 159  Q
    || ||||   || |  |  ||||||||||||||||||||||| ||||||    
T  24986921 ctgaaatacatagagtagcctatcatgactctaaatatatgttacattt 24986969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 4600902 - 4600964
Alignment:
Q  51 ccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttccta 113  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||| |||||||||||||    
T  4600902 ccaagatatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttccta 4600964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 25180925 - 25181010
Alignment:
Q  27 tgacttacttggtaagactctagaccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttcct 112  Q
    |||||||||||| |  | |||||||||||| ||||| ||||| || |||||||  ||||||| ||||||||| |||||||||||||    
T  25180925 tgacttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 25181010  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 25169155 - 25169222
Alignment:
Q  45 tctagaccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttcct 112  Q
    |||||||||||| ||||| ||||| || |||||||  ||||||| ||||||||| |||||||||||||    
T  25169155 tctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 25169222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 25252099 - 25252032
Alignment:
Q  45 tctagaccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttcct 112  Q
    |||||||||||| ||||| ||||| || |||||||  ||||||| ||||||||| |||||||||||||    
T  25252099 tctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct 25252032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 25018276 - 25018338
Alignment:
Q  51 ccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttccta 113  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||| | |||||||||||    
T  25018276 ccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcgacatcttccta 25018338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 25039387 - 25039449
Alignment:
Q  51 ccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttccta 113  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||| ||||||| |||||    
T  25039387 ccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcctccta 25039449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 4625050 - 4625111
Alignment:
Q  51 ccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttcct 112  Q
    |||||| ||||||||||| || |||||  ||||||||| ||||||||||  |||||||||||    
T  4625050 ccaagatatggagaatctgtatgcatctgtattcatattcttcatgatttgaacatcttcct 4625111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 30360341 - 30360258
Alignment:
Q  29 acttacttggtaagactctagaccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttcct 112  Q
    ||||||||||||  | ||||||||| || ||||| |||||||| ||||| | |||||||||||||||||| |||||||||||||    
T  30360341 acttacttggtagtattctagaccatgagatggataatctatatgcatctaaattcatatacttcatgatcccaacatcttcct 30360258  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 42157384 - 42157451
Alignment:
Q  45 tctagaccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttcct 112  Q
    |||||||||||| || ||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  42157384 tctagaccaagagattgagaatctataagcatccaaattcatattcctcatgatgccaacatcttcct 42157451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 42290041 - 42289974
Alignment:
Q  45 tctagaccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttcct 112  Q
    |||||||||||| || |||||||| || ||||||| |||||||| ||||||||| |||||||||||||    
T  42290041 tctagaccaagagatcgagaatctgtaggcatccaaattcatattcttcatgatgccaacatcttcct 42289974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 18803596 - 18803534
Alignment:
Q  51 ccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttccta 113  Q
    |||||| ||||||||||| || |||||  |||||||||||||||||||| |||||||||||||    
T  18803596 ccaagagatggagaatctgtatgcatctgtattcatatacttcatgattgcaacatcttccta 18803534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 42167895 - 42167958
Alignment:
Q  49 gaccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttcct 112  Q
    |||||||| || |||||||| |||||||| | |||||||| | ||||||| |||||||||||||    
T  42167895 gaccaagagattgagaatctgtaagcatctaaattcatattcctcatgatgccaacatcttcct 42167958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 29405711 - 29405630
Alignment:
Q  31 ttacttggtaagactctagaccaagaaatggagaatctataagcatccatattcatatacttcatgattccaacatcttcct 112  Q
    |||||||| || | ||| |||||||| || |||||||| ||||||||||| ||||| | |||||||||  | ||||||||||    
T  29405711 ttacttggcaatattcttgaccaagagattgagaatctgtaagcatccatgttcatgtccttcatgatctcgacatcttcct 29405630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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