View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_high_32 (Length: 239)
Name: NF7779_high_32
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 14653385 - 14653181
Alignment:
| Q |
15 |
atgaaggccaagttttgagactaagaaaatctttatatggattgaagtaagcctcccgagcatggtgagatcatccaagagcctgcacaaaaattgaaca |
114 |
Q |
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| T |
14653385 |
atgaaggccaagttttgaaactaagaaaatctttatatgggttgaagcaagcctcccgatcatgttgagatcatccaagagcctccacaaaaattgaaca |
14653286 |
T |
|
| Q |
115 |
ggatccttagacctttttggatcagtaacaagcttgttaacggacactcgaatgtgtgagatcatcacttcttttatttttgagagaccattaggaacac |
214 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14653285 |
ggatccttaaccctttttggatcagtaacaagcttgttaacagacactcgaatgtgtgagatcatcacttcttttatttttgagagaccattaggaacac |
14653186 |
T |
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| Q |
215 |
gtcgg |
219 |
Q |
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||||| |
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| T |
14653185 |
gtcgg |
14653181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 85 - 215
Target Start/End: Complemental strand, 14661750 - 14661620
Alignment:
| Q |
85 |
tcatccaagagcctgcacaaaaattgaacaggatccttagacctttttggatcagtaacaagcttgttaacggacactcgaatgtgtgagatcatcactt |
184 |
Q |
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|||||||||||||| |||||||| ||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
14661750 |
tcatccaagagcctctgcaaaaattcaacaggatcctccaacctctttggatcagtaacaagcttgtcaacggacactcgaatgtgtgagatcatcgctt |
14661651 |
T |
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| Q |
185 |
cttttatttttgagagaccattaggaacacg |
215 |
Q |
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||| ||||||| ||||||||| ||||||||| |
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| T |
14661650 |
cttgtatttttaagagaccatcaggaacacg |
14661620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 17690367 - 17690571
Alignment:
| Q |
15 |
atgaaggccaagttttgagactaagaaaatctttatatggattgaagtaagcctcccgagcatggtgagatcatccaagagcctgcacaaaaattgaaca |
114 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17690367 |
atgaaggccaagttttaagactaagaaaatctttatatgggttgaagcaagcctcctgagcatggtgagatcatccaagagcctccacaaaaattgaaca |
17690466 |
T |
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| Q |
115 |
ggatccttagacctttttggatcagtaacaagcttgttaacggacactcgaatgtgtgagatcatcacttcttttatttttgagagaccattaggaacac |
214 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17690467 |
ggatccttcaacctttttggatcaataacaagcttgttaacggacactcgaatgtgtgagatcatcacgtcttttatttttgagagaccattaggaacac |
17690566 |
T |
|
| Q |
215 |
gtcgg |
219 |
Q |
| |
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||||| |
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| T |
17690567 |
gtcgg |
17690571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 85 - 212
Target Start/End: Original strand, 17683511 - 17683638
Alignment:
| Q |
85 |
tcatccaagagcctgcacaaaaattgaacaggatccttagacctttttggatcagtaacaagcttgttaacggacactcgaatgtgtgagatcatcactt |
184 |
Q |
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|||||||| ||||| |||||||| ||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
17683511 |
tcatccaatagcctctgcaaaaattcaacaggatcctccaacctctttggatcagtaacaagcttgtcaacggacactcgaatgtgtgagatcatcgctt |
17683610 |
T |
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| Q |
185 |
cttttatttttgagagaccattaggaac |
212 |
Q |
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||| ||||||||||||||||| |||||| |
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| T |
17683611 |
cttgtatttttgagagaccatcaggaac |
17683638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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