View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_high_4 (Length: 574)
Name: NF7779_high_4
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_high_4 |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: scaffold0470 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Complemental strand, 1696 - 1140
Alignment:
| Q |
1 |
tatgaggcatatatagtagacgtagataagatagtgagagaagaaagacacaaaagagtggagaagggatagagattttacgggttaagggaggtcgggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1696 |
tatgaggcatatatagtagacgtagataagatagtgagagaagagagacacaaaagagtgaagaagggatagagattttacgggttaagggaggtcgggg |
1597 |
T |
|
| Q |
101 |
gagtagagtcatgtacaaattaagattcatttatagattttctagttcattgatggatttgaaagagagnnnnnnnnttggggtttatagcaagtgaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1596 |
gagtagagtcatgtacaaattaagattcatttatagattttctagttcattgatggatttgaaagagagagaaaaaattggggtttatagcaagtgaaag |
1497 |
T |
|
| Q |
201 |
agaattactttaaagagatggaaaaacaaataaacttaa----agacttgtttggtacaatataatatcaagaacatcttgctatatattttttagttga |
296 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1496 |
agaattacttttaagagatggaaaaacaaataaacttaattaaagacttgtttggtacaatataatatcaagaacatcttgctatatattttttagttga |
1397 |
T |
|
| Q |
297 |
aatcaaactcattatctttccaaatcacaatagtcacacattttgtacaacaaccacttacgttagacccaactatgtagtccatcatatcaacagaagc |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||| ||||||||||||||| |
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| T |
1396 |
aatcaaactcattatctttccaaatcacaatagtcacacattttgtacaacaaccatttacgttagactcaattatttagtccaccatatcaacagaagc |
1297 |
T |
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| Q |
397 |
accaaacacaaagatttaagacaactatataactgatacttttttatttcaatacatatataatcgacactcttaaaacatagattggcatgtatctcaa |
496 |
Q |
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| T |
1296 |
accaaacataaagatttaagacaactatataactgatacttttttatttcaatacatatataatcgacactcttaaaacattgattgtcatgtatctcaa |
1197 |
T |
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| Q |
497 |
actacaatgacgctattataactgctataaataagctactaatcatttgtactccct |
553 |
Q |
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| T |
1196 |
actacaatgacgctattataactgctataaataagctactaatcatttgtactccct |
1140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Complemental strand, 6612408 - 6611852
Alignment:
| Q |
1 |
tatgaggcatatatagtagacgtagataagatagtgagagaagaaagacacaaaagagtggagaagggatagagattttacgggttaagggaggtcgggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6612408 |
tatgaggcatatatagtagacgtagataagatagtgagagaagagagacacaaaagagtgaagaagggatagagattttacgggttaagggaggtcgggg |
6612309 |
T |
|
| Q |
101 |
gagtagagtcatgtacaaattaagattcatttatagattttctagttcattgatggatttgaaagagagnnnnnnnnttggggtttatagcaagtgaaag |
200 |
Q |
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| T |
6612308 |
gagtagagtcatgtacaaattaagattcatttatagattttctagttcattgatggatttgaaagagagagaaaaaattggggtttatagcaagtgaaag |
6612209 |
T |
|
| Q |
201 |
agaattactttaaagagatggaaaaacaaataaacttaa----agacttgtttggtacaatataatatcaagaacatcttgctatatattttttagttga |
296 |
Q |
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| T |
6612208 |
agaattacttttaagagatggaaaaacaaataaacttaattaaagacttgtttggtacaatataatatcaagaacatcttgctatatattttttagttga |
6612109 |
T |
|
| Q |
297 |
aatcaaactcattatctttccaaatcacaatagtcacacattttgtacaacaaccacttacgttagacccaactatgtagtccatcatatcaacagaagc |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||| ||||||||||||||| |
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| T |
6612108 |
aatcaaactcattatctttccaaatcacaatagtcacacattttgtacaacaaccatttacgttagactcaattatttagtccaccatatcaacagaagc |
6612009 |
T |
|
| Q |
397 |
accaaacacaaagatttaagacaactatataactgatacttttttatttcaatacatatataatcgacactcttaaaacatagattggcatgtatctcaa |
496 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
6612008 |
accaaacataaagatttaagacaactatataactgatacttttttatttcaatacatatataatcgacactcttaaaacattgattgtcatgtatctcaa |
6611909 |
T |
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| Q |
497 |
actacaatgacgctattataactgctataaataagctactaatcatttgtactccct |
553 |
Q |
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| T |
6611908 |
actacaatgacgctattataactgctataaataagctactaatcatttgtactccct |
6611852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 6585571 - 6585539
Alignment:
| Q |
228 |
aaataaacttaaagacttgtttggtacaatata |
260 |
Q |
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| T |
6585571 |
aaataaacttaaagacttgtttggtacaatata |
6585539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 281
Target Start/End: Complemental strand, 6660935 - 6660905
Alignment:
| Q |
251 |
gtacaatataatatcaagaacatcttgctat |
281 |
Q |
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| T |
6660935 |
gtacaatataatatcaagaacatcttgctat |
6660905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 281
Target Start/End: Complemental strand, 6741337 - 6741307
Alignment:
| Q |
251 |
gtacaatataatatcaagaacatcttgctat |
281 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
6741337 |
gtacaatataatatcaagaacatcttgctat |
6741307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 6582675 - 6582647
Alignment:
| Q |
253 |
acaatataatatcaagaacatcttgctat |
281 |
Q |
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| T |
6582675 |
acaatataatatcaagaacatcttgctat |
6582647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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