View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_high_5 (Length: 558)
Name: NF7779_high_5
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 28858680 - 28858139
Alignment:
| Q |
1 |
ggctcttctgcagcctgtgctctttttatttttctaaaccttccgtttcctaggagaaagggttgtgataatctgaattttgactgagaggtaagtaaag |
100 |
Q |
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| T |
28858680 |
ggctcttctgcagcctgtgctctttttatttttctaaaccttccgtttcctaggagaaagggctgtgataatctgaattttgactgagaggtaagtaaag |
28858581 |
T |
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| Q |
101 |
tttgatcaaggattgttccagtcaaagttgaattcaagtacttacggttgaatcaaccttatctgaagttcattaaccatttgatgtcttgatttacatt |
200 |
Q |
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| T |
28858580 |
tttgatcaaggattgttccagtcaaagttgaattcaagtacttacggttgaatcaaccttatctgaagttcattaaccatctgatgtcttgatttacatt |
28858481 |
T |
|
| Q |
201 |
aatgttgtttagtgtgtccaaaatgtggtttcttgttgtgtcaaatctactttgcataaaatggttccaatttccgnnnnnnncgagcaaagtgactaag |
300 |
Q |
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| T |
28858480 |
aatgttgtttagtgtgtccaaaatgtggtttcttgttgtgtcaaatctactttgcataaaatggttccaatttctgtttttttcgagcaaagtgactaag |
28858381 |
T |
|
| Q |
301 |
ttagttgttaggggtcaaaccatagacctcctgcaaaaactctttttgagtcccttagatcaccaatcgaactacttatttgggactgtttcttagtatt |
400 |
Q |
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| T |
28858380 |
ttagttgttagggatcaaaccatagacctcctgcaaaaactctttttgagtcccttagatcaccaatcgaactacttatttgggactgtttcttagtatt |
28858281 |
T |
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| Q |
401 |
tacccttgacttaaccttatcttttgcgtaggttcctaaattgtatgaatagaatgatctcataataaacaagtaaagcataagactagaaagtaagata |
500 |
Q |
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| T |
28858280 |
tacccttgacttaaccttatcttttgcgtaggttcctaaattgtatgaatagaatgatctcataataaacaagtaaagcataagactagaaagtaagata |
28858181 |
T |
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| Q |
501 |
tactgttgaaagnnnnnnngaaaatgttaatggctgcctttg |
542 |
Q |
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| T |
28858180 |
tactgttgaaagaaaaaaagaaaatgttaatggctgcctttg |
28858139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 28874021 - 28873803
Alignment:
| Q |
1 |
ggctcttctgcagcctgtgctctttttatttttctaaaccttccgtttcctaggagaaagggttgtgataatctgaattttgactgagaggtaagtaaag |
100 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||||||||||||||||||| || |
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| T |
28874021 |
ggctcttctgcaacctgtgttctttttatttttctaaaccttctatttcctaggagaaagggctatggtaatctgaattttgactgagaggtaagtagag |
28873922 |
T |
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| Q |
101 |
tttgatcaaggattgttccagtcaaagttgaattcaagtacttacggttgaatcaaccttatctgaagttcattaaccatttgatgtctt----gattta |
196 |
Q |
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| T |
28873921 |
tttgatcaaggactgttctagttaaagtcaaattcaagtacttacggttgaatcaaccttatttgaagttcattaaccacttgatgtgttgatcgattta |
28873822 |
T |
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| Q |
197 |
cattaatgttgtttagtgt |
215 |
Q |
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|||| ||||| |||||||| |
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| T |
28873821 |
cattgatgttctttagtgt |
28873803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 423 - 512
Target Start/End: Complemental strand, 28842851 - 28842762
Alignment:
| Q |
423 |
tttgcgtaggttcctaaattgtatgaatagaatgatctcataataaacaagtaaagcataagactagaaagtaagatatactgttgaaag |
512 |
Q |
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| T |
28842851 |
tttgtgtaggtccctcaattgtatggataaaatgatctcataataaacaagtatggcataaaagaagaaagcaagatagactgttgaaag |
28842762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 28843042 - 28842968
Alignment:
| Q |
193 |
tttacattaatgttgtttagtgtgtccaaaatgtggtttcttgttgtgtcaaatctactttgcataaaatggttc |
267 |
Q |
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| T |
28843042 |
tttacattaatgttctttggtgtgtcgataatgtggtttcttgttgtatcggatttactttacataaaatggttc |
28842968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 28843152 - 28843059
Alignment:
| Q |
29 |
tttttctaaaccttccgtttcctaggagaaagggttgtgataatctgaattttgactgagaggtaagtaaagtttgatcaaggattgttccagtca |
124 |
Q |
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| T |
28843152 |
tttttctaaaccctccgtttcctaggaaaaagggataagataattcgaatttcgaccgaga--tatgtaaagtttgattaaggattgttcaagtca |
28843059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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