View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_high_6 (Length: 510)
Name: NF7779_high_6
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 159 - 500
Target Start/End: Original strand, 53868073 - 53868414
Alignment:
| Q |
159 |
aaatttatgatccaactaacgaggatcgttatgttgtaaaagttgttgataattctatggtaaatgatacatgatcgacatatggcccgtgtcttcattt |
258 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
53868073 |
aaatttatgatccaactaacgaggatcgttatgttgtaaatgttgttgataattctatggtaaatgatacatgatcgacatatggcccgtttcttcattt |
53868172 |
T |
|
| Q |
259 |
gatatattcatttttcatatcttgcatttctttcttcatgctcgtgttttatcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattc |
358 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53868173 |
gatatatttatttttcatatcttgcatttctttcttcatgctcgtgttttatcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattc |
53868272 |
T |
|
| Q |
359 |
ctgaagatggagttagagagctgctggcgaataataagtctttggcctcttgtgacgttgcagttttcgccaatgacaggtgaaaaatgatatttaagtg |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
53868273 |
ctgaagatggagttagagagctgctggcgaataataagtctttggcctcttgtgacgttgcagttttcgttcatgacaggtgaaaaatgatatttaagtg |
53868372 |
T |
|
| Q |
459 |
ttcattacgccaatataccatagaaattatggattgcctttg |
500 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
53868373 |
ttcattacgccaatataacatagaaattatggattgcctttg |
53868414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 159 - 484
Target Start/End: Complemental strand, 54159238 - 54158912
Alignment:
| Q |
159 |
aaatttatgatccaactaacgaggatcgttatgttgtaaaagttgttgataattctatggtaaatgatacatgatcgacatatggcccgtgtcttcattt |
258 |
Q |
| |
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||||||| ||||||| |||||||||| ||||| ||| || || |||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
54159238 |
aaatttacaatccaaccaacgaggatcattatgctgtgaatgtggttgatgattctatggtaaatgatacatgattcacatatgacccgtgtcttcattt |
54159139 |
T |
|
| Q |
259 |
gatatattcatttttca-tatcttgcatttctttcttcatgctcgtgttttatcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaatt |
357 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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|
| T |
54159138 |
gatatattcattttttaatatcttgcatttctttcttcatatttatgttttatcattttgtttgcagggaaagaagaaatatcttgtgctgagagagatt |
54159039 |
T |
|
| Q |
358 |
cctgaagatggagttagagagctgctggcgaataataagtctttggcctcttgtgacgttgcagttttcgccaatgacaggtgaaaaatgatatttaagt |
457 |
Q |
| |
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|||||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||| || | | |||||||||||| ||||||||||||| |
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| T |
54159038 |
cctgaagatggagttaaagggctgctggcgaataaggagtctttggcctcttgtgacattgcaattattgttcatgacaggtgaatgatgatatttaagt |
54158939 |
T |
|
| Q |
458 |
gttcattacgccaatataccatagaaa |
484 |
Q |
| |
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|||||||| ||| ||||||||| |||| |
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|
| T |
54158938 |
gttcattatgcctatataccattgaaa |
54158912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 53867249 - 53867394
Alignment:
| Q |
19 |
cctatgtcctttgttgtgtaatttttcaaacgtgcacattctataaggatctggtttatactttgaactatgaattgttttttatatgtatgcctttccc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53867249 |
cctatgtcctttgttgtgtaatttttcaaacgtgcacattctataaggatctggtttatactttgaactatgaattgttttttatatgtatgcctttccc |
53867348 |
T |
|
| Q |
119 |
aagtagggatgtcaatgttgacttttgccgatgttatttaaaattt |
164 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
53867349 |
aagtagggatttcaatgttgacttttgccgatgttatttaatattt |
53867394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 276 - 419
Target Start/End: Complemental strand, 51366031 - 51365889
Alignment:
| Q |
276 |
tatcttgcatttctttcttcatgctcgtgttttatcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagt-tag |
374 |
Q |
| |
|
||||||||||||||||||||| | || |||||||||||| ||||||||||||||||||||||||||| ||| ||| |||| |||||||||||| || |
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|
| T |
51366031 |
tatcttgcatttctttcttcaagttcatgttttatcattag--ttgcagggaaacaagaaatatcttgtgttgaaagagattcatgaagatggagtcaag |
51365934 |
T |
|
| Q |
375 |
agagctgctggcgaataataagtctttggcctcttgtgacgttgc |
419 |
Q |
| |
|
||| |||||||| ||||| |||||||||||||||||||| |||| |
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|
| T |
51365933 |
agaactgctggctaataaggagtctttggcctcttgtgacattgc |
51365889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 51366189 - 51366120
Alignment:
| Q |
169 |
tccaactaacgaggatcgttatgttgtaaaagttgttgataattctatggtaaatgatacatgatcgaca |
238 |
Q |
| |
|
|||||| |||||||||||||||| |||||| ||||||||| | |||||||||||||||| ||||||||| |
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|
| T |
51366189 |
tccaaccaacgaggatcgttatgctgtaaatgttgttgattttgctatggtaaatgatacttgatcgaca |
51366120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 309 - 441
Target Start/End: Complemental strand, 15048373 - 15048241
Alignment:
| Q |
309 |
atcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcctct |
408 |
Q |
| |
|
||||||||||||| ||| |||||| |||||||||||||||||||| ||| |||||| ||||| | | ||||||| || ||||| |||||||||||||| |
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| T |
15048373 |
atcattttgtttgtaggaaaacaaaaaatatcttgtgctgagagagatttctgaaggaggagtcacaaagctgctagccaataagaagtctttggcctca |
15048274 |
T |
|
| Q |
409 |
tgtgacgttgcagttttcgccaatgacaggtga |
441 |
Q |
| |
|
|||||| ||||| |||| | ||||||||||| |
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|
| T |
15048273 |
tgtgacattgcaatttttgtttatgacaggtga |
15048241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 309 - 425
Target Start/End: Complemental strand, 17881140 - 17881024
Alignment:
| Q |
309 |
atcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcctct |
408 |
Q |
| |
|
||||||||||||| ||| |||||| |||||||||||||||||||| ||| |||||| |||||| | | ||||||| || ||||| ||||||||||||| |
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|
| T |
17881140 |
atcattttgtttgtaggaaaacaaaaaatatcttgtgctgagagagatttctgaaggtggagtcacaaagctgctagccaataaggagtctttggcctca |
17881041 |
T |
|
| Q |
409 |
tgtgacgttgcagtttt |
425 |
Q |
| |
|
|||||| |||| ||||| |
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|
| T |
17881040 |
tgtgacattgcggtttt |
17881024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 306 - 441
Target Start/End: Complemental strand, 15015639 - 15015504
Alignment:
| Q |
306 |
tttatcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcc |
405 |
Q |
| |
|
|||| ||||||||||| ||| |||||| |||||| ||||||||||||| ||| |||||| |||||||| | ||||||| || || || ||||| ||| | |
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|
| T |
15015639 |
tttaccattttgtttgtaggaaaacaaaaaatatattgtgctgagagagatttctgaaggtggagttacaaagctgctagcaaacaaggagtctctgggc |
15015540 |
T |
|
| Q |
406 |
tcttgtgacgttgcagttttcgccaatgacaggtga |
441 |
Q |
| |
|
|| |||||| |||||||||| | ||||||||||| |
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|
| T |
15015539 |
tcatgtgacattgcagtttttgttcatgacaggtga |
15015504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 17881337 - 17881277
Alignment:
| Q |
168 |
atccaactaacgaggatcgttatgttgtaaaagttgttgataattctatggtaaatgatac |
228 |
Q |
| |
|
||||||| ||||||||||| |||| |||||| |||||||||| |||||||||||||||||| |
|
|
| T |
17881337 |
atccaaccaacgaggatcgctatgctgtaaatgttgttgatatttctatggtaaatgatac |
17881277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 414
Target Start/End: Complemental strand, 14773869 - 14773768
Alignment:
| Q |
313 |
ttttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcctcttgtg |
412 |
Q |
| |
|
|||| |||| ||| |||||| |||||||||||| ||||||| ||| ||||| |||||| | |||||||||||| || || ||||||||||||| |||| |
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|
| T |
14773869 |
ttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaacaaggagtctttggcctcatgtg |
14773770 |
T |
|
| Q |
413 |
ac |
414 |
Q |
| |
|
|| |
|
|
| T |
14773769 |
ac |
14773768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 36876225 - 36876271
Alignment:
| Q |
163 |
ttatgatccaactaacgaggatcgttatgttgtaaaagttgttgata |
209 |
Q |
| |
|
|||| ||||||| |||||||||||||||| |||||| |||||||||| |
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|
| T |
36876225 |
ttataatccaaccaacgaggatcgttatgctgtaaatgttgttgata |
36876271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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