View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_low_1 (Length: 466)
Name: NF7779_low_1
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 9279007 - 9278765
Alignment:
| Q |
1 |
gatcaaaaaggaaccattactattccttgtcatgttgaagaattcagaaacgttcgtggtttgattgatagagacaaaaatcttcatcatcaacatgttg |
100 |
Q |
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| T |
9279007 |
gatcaaaaaggaaccattactattccttgtcatgttgaagaattcagaaacgttcgtggtttgattgatagagacaaaaatcttcatcatcaacatgttg |
9278908 |
T |
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| Q |
101 |
gttgttttggtttgtgagaaaaccatgaagttgnnnnnnnnnnnnnnnnnnntaaatttacatgaaaaattatcttcttttgagtcttaacccttgaatc |
200 |
Q |
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| T |
9278907 |
gttgttttggtttgtgagaaaaccatgaagttggaagaagaaagaagaagaataaatttacatgaaaaattatcttcttttgagtcttaaaccttgaatc |
9278808 |
T |
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| Q |
201 |
atggtttcatgtttgcaatgatttggtcatgtaaatttctagt |
243 |
Q |
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| T |
9278807 |
atggtttcatgtttgcaatgatttggtcatgtaaatttctagt |
9278765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 295 - 451
Target Start/End: Complemental strand, 9278732 - 9278576
Alignment:
| Q |
295 |
gctgaaggtgaatgaccacagaatgttggttttccgaatgaagttaattttcttattaatttgatgagaactttaatgcaagatagtgatgcttttctat |
394 |
Q |
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| T |
9278732 |
gctgaaggtgaatgaccacagaatgttggttttccgaatgaagttaattttcttattaatttgatgagaactttaatgcaagatagtgatgcttttctat |
9278633 |
T |
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| Q |
395 |
acttttattgaagattttttcctcttttacgggtgagaatggtgcaccactcttttg |
451 |
Q |
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| T |
9278632 |
acttttattgaagatttttttctcttttacgggtgagaatggtgcaccactcttttg |
9278576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 48972017 - 48972139
Alignment:
| Q |
1 |
gatcaaaaaggaaccattactattccttgtcatgttgaagaattcagaaacgttcgtggtttgattgatagagacaaaaatcttcatc---atcaacatg |
97 |
Q |
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||||| |||||| |||| ||||| ||||||| |||||| || ||||||||| | | |||||||||||||| || || |||||||| |||| |||| |
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| T |
48972017 |
gatcataaaggagccataactatcccttgtcgtgttgaggagttcagaaacataagaggtttgattgatagggaaaagtctcttcatcacaatcatcatg |
48972116 |
T |
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| Q |
98 |
ttggttgttttggtttgtgagaa |
120 |
Q |
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|||| || |||||||| |||||| |
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| T |
48972117 |
ttggatgctttggtttctgagaa |
48972139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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