View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_low_10 (Length: 442)
Name: NF7779_low_10
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Complemental strand, 43016505 - 43016099
Alignment:
| Q |
19 |
aattccacttatttctctaaacgtgttgaatatatgattatgatcatgacattttgattgaaaagtcaataagttacaacataggattacttcaaagttc |
118 |
Q |
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| T |
43016505 |
aattccacttatttctctaaacgtgttgaatatatgattatgatcatgacattttgattgaaaagtcaataagttacaacataggattacttcaaagttc |
43016406 |
T |
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| Q |
119 |
atacgtaatggcattcatatgttgtacacctcatagatatagcattacggtaatgctatatacaaactattttcagtaacatctgataaataaataaata |
218 |
Q |
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| T |
43016405 |
atacgtaatggcattcatatgttgtacacctcatagatatagcattacggtaatgctatatacaaactattttcagtaa---ctg----ataaataaata |
43016313 |
T |
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| Q |
219 |
caatacactatttgtacacctcataggtataaaattatgatcaagagtggaatctacaaaggaattcaataaaagccttcacgaaaactcatttgttaat |
318 |
Q |
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| T |
43016312 |
caatacactatttgtacacctcataggtatagaattatgatcaagagtggaatctacaaaggaattcaataaaagccttcacgaaaactcatttgttaat |
43016213 |
T |
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| Q |
319 |
ttcattctatagcaatatagagccaaaataatgcttctggtcatttttcaatctgtgatgttgctgtgatgcaagatacatgtgatgtgactaactaaac |
418 |
Q |
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| T |
43016212 |
ttcattctatagcaatatagagccaaaataatgcttctggtcatttttcaatctgtgatgttgctgtgatgcaagatacatgtgatgtgactaactaaac |
43016113 |
T |
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| Q |
419 |
accaccgtcctttg |
432 |
Q |
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| T |
43016112 |
accaccgtcctttg |
43016099 |
T |
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