View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_low_11 (Length: 440)
Name: NF7779_low_11
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 4 - 335
Target Start/End: Original strand, 42001108 - 42001439
Alignment:
| Q |
4 |
gggtagattattctatttaataaattgtctataaataaagtattttacattattgtttgatatttaagggctactaatagttcaaagtttttgcgtgcga |
103 |
Q |
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| T |
42001108 |
gggtagtttattctatttaataaattgcctataaatagagtattttacattattgtttgatatttaagggctactaatagttcaaagtttttgcatgcga |
42001207 |
T |
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| Q |
104 |
aacacaatctaaacactgtgggtagaaagattttattagaggaaggattcaaactttctctcttttctttttggcaatcttcttgtgggttgagaaaaga |
203 |
Q |
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| T |
42001208 |
aacacaatctaaacatcgtgggtagaaagattttattagaggaaggattcaaactttctctcttttctttttggcaatcttcttgtgggttgagaaaagg |
42001307 |
T |
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| Q |
204 |
acaaaaaagagtaaaaattaaagtttattattaaagcctatttcttgtaacttcttttaatatcttgtaaagactcgttgaccgagaatcgaagatttgt |
303 |
Q |
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| T |
42001308 |
acacaaaagagtagaaattaaagtttattattaaaacctatttcttgtaacttcttttaatatcttgtaaagactcgttgacagtggactgaagaattgt |
42001407 |
T |
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| Q |
304 |
tctctccactaaacataaatcaatttgctaga |
335 |
Q |
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| T |
42001408 |
tctctccactaaatataaatcaatttgctaga |
42001439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 440
Target Start/End: Original strand, 42001493 - 42001531
Alignment:
| Q |
402 |
ctcaacatatttacttgtcgaattcacaagaccggtata |
440 |
Q |
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| T |
42001493 |
ctcaacatatttacttgtcgaattcacaacaccggtata |
42001531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 19933404 - 19933469
Alignment:
| Q |
102 |
gaaacacaatctaaacactgtgggtagaaagattttattagaggaaggattcaaactttctctctt |
167 |
Q |
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| T |
19933404 |
gaaatacactctaaacaccttgggtagagagatttcattagaggaatgattgaagctttctctctt |
19933469 |
T |
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