View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_low_12 (Length: 435)
Name: NF7779_low_12
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 33332239 - 33332645
Alignment:
| Q |
19 |
aaaaaattgaaaagtcataagttgggaaccccatacaaaagaaataaactaaagggggaggtgaaacttacatgagaaccactccatggaagggttggca |
118 |
Q |
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| T |
33332239 |
aaaaatttgaaaagtcataagttgggaaccccatacaaaagaaataaactaaagggggaggtgaaacttacatgagaaccactccatggaagggttggca |
33332338 |
T |
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| Q |
119 |
cttttgctgcttgagcaatcaacaatgaagcaattttatctcccaacgttgccatagatatagcaggaggtccaagaaatacaattcctttttctttcaa |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33332339 |
cttctgctgcttgagcaatcaacaatgaagcaattttatctcccaaagctgccatagatatagcaggaggtccaagaaatacaattcctttttctttcaa |
33332438 |
T |
|
| Q |
219 |
tgcatttggaagctcaagatcctctgatgcatgaccccaaccaggccacaccgcatcaacgtgagttatctcagcaatctgggaagtacattgcactacc |
318 |
Q |
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| T |
33332439 |
tgcatttggaagctcaagatcctctgatgcatgaccccaaccaggccacaccgcatcaacgtgagttatctcagcaatctgggaagtacattgcactacc |
33332538 |
T |
|
| Q |
319 |
attaagaatttagaatattcttaactacttaagaattgaaatgatttgaatgacaagaatatgctgaagtaatctcatgaagtcgacatcacgcacctct |
418 |
Q |
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| T |
33332539 |
attaagaatttagaatattcttaactacttaagaattgaaatgatttgaatgacaagaatatgctgaagtaatctcatgaagtcgacatcacgcacctct |
33332638 |
T |
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| Q |
419 |
agaataa |
425 |
Q |
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| T |
33332639 |
agaataa |
33332645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 33353528 - 33353822
Alignment:
| Q |
19 |
aaaaaattgaaaagtcataagttgggaaccccatacaaaagaaataaactaaagggggaggtgaaacttacatgagaaccactccatggaagggttggca |
118 |
Q |
| |
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||||||||| |||||||| ||||| |||||||||||||||||||| ||||| || |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33353528 |
aaaaaattgcaaagtcatgagttgcgaaccccatacaaaagaaatgaactacagcaggagacgaaacttacatgagaaccactccatggaagggttggca |
33353627 |
T |
|
| Q |
119 |
cttttgctgcttgagcaatcaacaatgaagcaattttatctcccaacgttgccatagatatagcaggaggtccaagaaatacaattcctttttctttcaa |
218 |
Q |
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||| |||||||||||||||||| ||||| ||||||| |||||||| | ||||||||||||||||||||||||||| ||||||||||||||| |||| || |
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| T |
33353628 |
cttctgctgcttgagcaatcaatgatgaaccaattttgtctcccaatgctgccatagatatagcaggaggtccaaggaatacaattccttttgcttttaa |
33353727 |
T |
|
| Q |
219 |
tgcatttggaagctcaagatcctctgatgcatgaccccaaccaggccacaccgcatcaacgtgagttatctcagcaatctgggaagtacattgca |
313 |
Q |
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||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| |
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| T |
33353728 |
tgcatctggaagctcaggattttctgatgcatgaccccaaccaggccacaccgcatcaacgtgagttatctcagcaatctggaatgtatattgca |
33353822 |
T |
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