View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_low_15 (Length: 405)
Name: NF7779_low_15
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 28488186 - 28488574
Alignment:
| Q |
1 |
gcaccagattggtttaggagtgcaccaatcacttcaaaggttgatacttatagttttggtgtattgttgttagaaatcatttgttgtaggaaaaatgtag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28488186 |
gcaccagattggtttaggagtgcaccaatcacttcaaaggttgatacttatagttttggtgtattgttgttagaaatcatttgttgtaggaaaaatgtag |
28488285 |
T |
|
| Q |
101 |
agagagaattttttactgaagaaaaagggattttaactgattgggcttatgattgctataagactaaaagacttgacggtcttctagaacatgataatga |
200 |
Q |
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| T |
28488286 |
agagagaattttttactgaagaaaaagggattttaactgattgggcttatgattgctataagactaaaagacttgacggtcttctagaaaatgataatga |
28488385 |
T |
|
| Q |
201 |
ggctggcaatgacatgatggccttggaaaagtttgtgatgattgcgatttggtgcattcaagaagatccttctcttaggccaacaatgaagaatgtttta |
300 |
Q |
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| T |
28488386 |
ggctggcaatgacatgatgtgcttggaaaagtttgtgatgattgctatttggtgcattcaagaagatccttctcttaggccaacaatgaagaatgtttta |
28488485 |
T |
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| Q |
301 |
ctgatgttagaaggaattgttgaagttgcagttcccccaagtccctatctgtatggttctgtaagttgtaattagaattagtttctttt |
389 |
Q |
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| T |
28488486 |
ctgatgttagaaggaattgttgaagttgcagttcccccaagtccctatctgtatggttctgtaagttgtaattagaattagtttctttt |
28488574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 28466425 - 28466780
Alignment:
| Q |
1 |
gcaccagattggtttaggagtgcaccaatcacttcaaaggttgatacttatagttttggtgtattgttgttagaaatcatttgttgtaggaaaaatgtag |
100 |
Q |
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| T |
28466425 |
gcaccagattggtttaggagtgcaccaatcactgcaaaggttgatacttatagttttggtgtattgttgttagagatcatttgttgtaggaaaaatgtag |
28466524 |
T |
|
| Q |
101 |
agagagaattttttactgaagaaaaagggattttaactgattgggcttatgattgctataagactaaaagacttgacggtcttctagaacatgataatga |
200 |
Q |
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||| |||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28466525 |
agaaagaaattttcactgaagaacaagggattttaactgattgggcttatgattgctataagactaaaagacttgacggtcttctagaaaatgataatga |
28466624 |
T |
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| Q |
201 |
ggctggcaatgacatgatggccttggaaaagtttgtgatgattgcgatttggtgcattcaagaagatccttctcttaggccaacaatgaagaatgtttta |
300 |
Q |
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| T |
28466625 |
ggctggcaatgacatgatgtgcttggaaaagtttgtgatgattgctatttggtgcattcaagaagatccttctcttaggccaacaatgaagaatgtttta |
28466724 |
T |
|
| Q |
301 |
ctgatgttagaaggaattgttgaagttgcagttcccccaagtccctatctgtatgg |
356 |
Q |
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| T |
28466725 |
ctgatgttagaaggaattgttgaagttgcagttcccccaagtccctatctatatgg |
28466780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 28445579 - 28445967
Alignment:
| Q |
1 |
gcaccagattggtttaggagtgcaccaatcacttcaaaggttgatacttatagttttggtgtattgttgttagaaatcatttgttgtaggaaaaatgtag |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||| |||| |
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| T |
28445579 |
gcaccagattggtttaggagtgcaccaatcactgcaaaggttgatacttatagttttggtgtattattgttagagataatatgttgtaggaaaaacgtag |
28445678 |
T |
|
| Q |
101 |
agagagaattttttactgaagaaaaagggattttaactgattgggcttatgattgctataagactaaaagacttgacggtcttctagaacatgataatga |
200 |
Q |
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||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||| | |||||||| |
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| T |
28445679 |
agaaagaattttttaccgaagaaaaagggattttaactgattgggcttatgattgctacaagactaaaagacttgacattcttctcgaaaaagataatga |
28445778 |
T |
|
| Q |
201 |
ggctggcaatgacatgatggccttggaaaagtttgtgatgattgcgatttggtgcattcaagaagatccttctcttaggccaacaatgaagaatgtttta |
300 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28445779 |
ggctagcaatgacatgatgtgcttggaaaagtttgtgatgattgctatttggtgcattcaagaagatccttctcttaggccaacaatgaagaaggtttta |
28445878 |
T |
|
| Q |
301 |
ctgatgttagaaggaattgttgaagttgcagttcccccaagtccctatctgtatggttctgtaagttgtaattagaattagtttctttt |
389 |
Q |
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| T |
28445879 |
ctgatgttagaaggaattgttgaagttgcagctcccccaagtccctatctatatggttctgtaagttctaattaaaatctgtttctttt |
28445967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 28438130 - 28438512
Alignment:
| Q |
1 |
gcaccagattggtttaggagtgcaccaatcacttcaaaggttgatacttatagttttggtgtattgttgttagaaatcatttgttgtaggaaaaatgtag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||||| ||||| | ||||| ||||||||||| |||||||||| |
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| T |
28438130 |
gcaccagattggtttaggagtgcaccaatcagcgctaaggttgatgtttacagttttggtgtcttgtttcttgaaataatttgttgtagaaaaaatgtag |
28438229 |
T |
|
| Q |
101 |
agagagaattttttactgaagaaaaagggattttaactgattgggcttatgattgctataagactaaaagacttgacggtcttctagaacatgataatga |
200 |
Q |
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|| ||| | | ||||||||| ||||||||||||||||||| ||||||||||| ||| |||| | | ||| |||||||||| |||| ||| |
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| T |
28438230 |
agcatgaaaatgcaagtgaagaaaagaggattttaactgattgggcatatgattgctacaaggctaataatttggaccttcttctagaaaatgaatgtga |
28438329 |
T |
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| Q |
201 |
ggctggcaatgacatgatggccttggaaaagtttgtgatgattgcgatttggtgcattcaagaagatccttctcttaggccaacaatgaagaatgtttta |
300 |
Q |
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|| || |||||| |||| ||||||| ||||| |||||||| |||||||| | |||||||||||| |||||||| |||||||||||||| ||||| |
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| T |
28438330 |
ggttgtcaatgaaatgagtagagtggaaaaatttgtcatgattgctatttggtgtactcaagaagatccatctcttagaccaacaatgaagaaggttttg |
28438429 |
T |
|
| Q |
301 |
ctgatgttagaaggaattgttgaagttgcagttcccccaagtccctatctgtatggttctgtaagttgtaattagaattagtt |
383 |
Q |
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| ||| |||||| ||||||||||||||| |||| ||||||||||| || ||||||||| | ||||| ||||| |||||||| |
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| T |
28438430 |
caaatgctagaagagattgttgaagttgcaattcctccaagtccctacctctatggttcttttagttgaaattaaaattagtt |
28438512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 3036046 - 3036087
Alignment:
| Q |
117 |
tgaagaaaaagggattttaactgattgggcttatgattgcta |
158 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||| |
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| T |
3036046 |
tgaagacaaagcaattttaactgattgggcttatgattgcta |
3036087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 3056914 - 3056955
Alignment:
| Q |
117 |
tgaagaaaaagggattttaactgattgggcttatgattgcta |
158 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||||||||| |
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| T |
3056914 |
tgaagacaaagcaattttaactgattgggcttatgattgcta |
3056955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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