View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7779_low_16 (Length: 402)
Name: NF7779_low_16
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_low_16 |
 | |
|
| [»] scaffold0508 (1 HSPs) |
| | |
|
| [»] scaffold0281 (1 HSPs) |
| | |
|
| [»] scaffold0799 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 396
Target Start/End: Original strand, 17463335 - 17463722
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17463335 |
gacatcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
17463434 |
T |
|
| Q |
109 |
aacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17463435 |
aacattctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgta |
17463534 |
T |
|
| Q |
209 |
aaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttctgcatgaacaaaattca |
308 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17463535 |
aaaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctgcatgaacaaaattca |
17463634 |
T |
|
| Q |
309 |
cttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
396 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17463635 |
cttttttctcattcttgcgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtg |
17463722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 396
Target Start/End: Complemental strand, 17589879 - 17589492
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17589879 |
gacatcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
17589780 |
T |
|
| Q |
109 |
aacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17589779 |
aacattctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgta |
17589680 |
T |
|
| Q |
209 |
aaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttctgcatgaacaaaattca |
308 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17589679 |
aaaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctgcatgaacaaaattca |
17589580 |
T |
|
| Q |
309 |
cttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
396 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17589579 |
cttttttctcattcttgcgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtg |
17589492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 396
Target Start/End: Complemental strand, 7343583 - 7343196
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7343583 |
gacatcatcatgttccctcatgttgccaccaaatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
7343484 |
T |
|
| Q |
109 |
aacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7343483 |
aacattctccatgtggcaaattttacaacttggatacttttgctctcaaagcaacaaaggacaacacttgtagctttcaaagaagtgccaaacagctgta |
7343384 |
T |
|
| Q |
209 |
aaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttctgcatgaacaaaattca |
308 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||| ||| |||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7343383 |
aaaacaagtggcctccaaacttctacggcttgcatttacgcgtccacattttctctttgcaaattggaagttccagaacgttctgcatgaacaaaattca |
7343284 |
T |
|
| Q |
309 |
cttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
396 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7343283 |
cttttttctcattcttgcactccaagcaacaaaaacataagcacataggctgtttttagcaaggaaaacacagttgtttttgtctgtg |
7343196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 396
Target Start/End: Complemental strand, 16282225 - 16281826
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16282225 |
gacatcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
16282126 |
T |
|
| Q |
109 |
aacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16282125 |
aacattctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgta |
16282026 |
T |
|
| Q |
209 |
aaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgt------------tctgcat |
296 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||| |
|
|
| T |
16282025 |
aaaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctggagaacgttctgcat |
16281926 |
T |
|
| Q |
297 |
gaacaaaattcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
396 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16281925 |
gaacaaaattcacttttttctcattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtg |
16281826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 396
Target Start/End: Complemental strand, 16296429 - 16296030
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16296429 |
gacatcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
16296330 |
T |
|
| Q |
109 |
aacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16296329 |
aacattctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgta |
16296230 |
T |
|
| Q |
209 |
aaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgt------------tctgcat |
296 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||| |
|
|
| T |
16296229 |
aaaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctggagaacgttctgcat |
16296130 |
T |
|
| Q |
297 |
gaacaaaattcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
396 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16296129 |
gaacaaaattcacttttttctcattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtg |
16296030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 76 - 396
Target Start/End: Complemental strand, 17453869 - 17453549
Alignment:
| Q |
76 |
aaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacac |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| |
|
|
| T |
17453869 |
aaaaaggaaaggaacaacaagaatgttcttaagaacattctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcac |
17453770 |
T |
|
| Q |
176 |
ttgtagcttccaaagaagtgccaaacagctgtaaaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttgg |
275 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17453769 |
ttgtagctttcaaagaagtgccaaacagctgtaaaaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattgg |
17453670 |
T |
|
| Q |
276 |
aaattccagaacgttctgcatgaacaaaattcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaa |
375 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
17453669 |
aagttccagaacgttctgcatgaacaaaattcacttttttctcattcttgcgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaa |
17453570 |
T |
|
| Q |
376 |
acacagctgtttttgtctgtg |
396 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
17453569 |
acacagctgtttttgtctgtg |
17453549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 396
Target Start/End: Original strand, 12593871 - 12594271
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaa-aggaaaggaacaacaagaatgttcttaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12593871 |
gacatcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgcctcaaaaaaggaaaggaacaacaagaatgttcttaa |
12593970 |
T |
|
| Q |
108 |
gaacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgt |
207 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||| ||||||| ||||||||||||| |
|
|
| T |
12593971 |
gaacattctccatttggcaaattttacaacttggacactcttgctctcaaagcaaaaaaggacagcacttgtagcttttaaagaagcgccaaacagctgt |
12594070 |
T |
|
| Q |
208 |
aaaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattcc------------agaacgttctgca |
295 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
12594071 |
aaaaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctggagaacgttctgca |
12594170 |
T |
|
| Q |
296 |
tgaacaaaattcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
395 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12594171 |
tgaacaaaattcacttttttctcattcttgcgctccaagcaacaaaaacataaccacatgggctgtttttaacaaggaaaacacagctgtttttgtctgt |
12594270 |
T |
|
| Q |
396 |
g |
396 |
Q |
| |
|
| |
|
|
| T |
12594271 |
g |
12594271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 292
Target Start/End: Original strand, 12584065 - 12584348
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12584065 |
gacatcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
12584164 |
T |
|
| Q |
109 |
aacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12584165 |
aacattctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgta |
12584264 |
T |
|
| Q |
209 |
aaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttct |
292 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
12584265 |
aaaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttct |
12584348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 393
Target Start/End: Complemental strand, 48297099 - 48296709
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnn--atcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttctta |
106 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48297099 |
gacattatcatgtcccctcatgttgccaccagatcacaactattttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttctta |
48297000 |
T |
|
| Q |
107 |
agaacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctg |
206 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| ||||||| || |
|
|
| T |
48296999 |
agaacattctccatgtggcaaactttacaacttggacattcttgctttcaaagcaacaaaggacaacacttgtagctgtcaaagaagtgtcaaacagttg |
48296900 |
T |
|
| Q |
207 |
taaaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagtt---ggaaattc--cagaacgttctgcatgaaca |
301 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | | ||| ||||| || |||||| ||| |
|
|
| T |
48296899 |
taaaaacaagtggcctccaaacttctacagcttgcattcacgtgtcaaccttttctctttgcaagttccagaacgttctggagaacattttgcatggaca |
48296800 |
T |
|
| Q |
302 |
aaattcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtct |
393 |
Q |
| |
|
|||| ||| |||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48296799 |
aaatgcacatttttctcattcttgcgcaccaagcaacaaaaacataagcaca-gggctgtttttagcaaggaaaacacaactgtttttgtct |
48296709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 396
Target Start/End: Complemental strand, 14337647 - 14337260
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14337647 |
gacatcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacatgtggttgtctaaaaaaggaaaggaacaacaagaatgttcttaag |
14337548 |
T |
|
| Q |
109 |
aacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14337547 |
aacattctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgta |
14337448 |
T |
|
| Q |
209 |
aaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttctgcatgaacaaaattca |
308 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14337447 |
aaaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctgcatgaacaaaattca |
14337348 |
T |
|
| Q |
309 |
cttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
396 |
Q |
| |
|
|||||||||||| |||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14337347 |
cttttttctcattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtg |
14337260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 396
Target Start/End: Complemental strand, 23602834 - 23602435
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23602834 |
gacatcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
23602735 |
T |
|
| Q |
109 |
aacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23602734 |
aacattctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgta |
23602635 |
T |
|
| Q |
209 |
aaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgt------------tctgcat |
296 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||| |
|
|
| T |
23602634 |
aaaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctggagaacgttctgcat |
23602535 |
T |
|
| Q |
297 |
gaacaaaattcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
396 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23602534 |
gaacaaaattcacttttttctcattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtg |
23602435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 396
Target Start/End: Complemental strand, 23593913 - 23593514
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23593913 |
gacatcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
23593814 |
T |
|
| Q |
109 |
aacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| |||| |||||||||||||||||| |
|
|
| T |
23593813 |
aacattctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaaaaagtgccaaacagctgta |
23593714 |
T |
|
| Q |
209 |
aaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattcc------------agaacgttctgcat |
296 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| |
|
|
| T |
23593713 |
aaaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaatgttctggagaacgttctgcat |
23593614 |
T |
|
| Q |
297 |
gaacaaaattcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
396 |
Q |
| |
|
||||||||||||||||||||| || |||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23593613 |
gaacaaaattcacttttttctaattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctgtttttgtctgtg |
23593514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 396
Target Start/End: Complemental strand, 40817514 - 40817123
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40817514 |
gacatcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
40817415 |
T |
|
| Q |
109 |
aacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctg-- |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| |||||||||| |||||||||| |
|
|
| T |
40817414 |
aacattctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgtcaaacagctgga |
40817315 |
T |
|
| Q |
207 |
--taaaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttctgcatgaacaaaa |
304 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
40817314 |
aaaaaaaacaagtggcctccaaacttctacagcttgcattcacgcgtccaccttttctctttgcaaattggaagttccagaacgttctgcatgaacaaaa |
40817215 |
T |
|
| Q |
305 |
ttcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
396 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40817214 |
ttcacttttttctcattcttgcgctccaagcaacaaaaacataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
40817123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 395
Target Start/End: Original strand, 55789220 - 55789611
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55789220 |
gacatcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
55789319 |
T |
|
| Q |
109 |
aacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgta |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
55789320 |
aacattcttcatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgta |
55789419 |
T |
|
| Q |
209 |
aaaa----caagtggcccccaaacttctacagcttgcattcacgtgtccacc-ttttctctttgcaagttggaaattccagaacgttctgcatgaacaaa |
303 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
55789420 |
aaaaaaagcaagtggcctccaaacttctacagcttgcattcacgcgtccacctttttctctttgccaattggaagttccagaacgttctgcatgaacaaa |
55789519 |
T |
|
| Q |
304 |
attcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
395 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55789520 |
attcacttttttctcattcttgcactccaagcaacaaaaacataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
55789611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 9 - 396
Target Start/End: Original strand, 18867758 - 18868148
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18867758 |
gacatcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
18867857 |
T |
|
| Q |
109 |
aacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgt- |
207 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18867858 |
aacattctccatgtcgaaaattttgcaacttggacactctttctctcaaagcaacaaaggacaacacttgtagcttccaaagaagtgccaaacagctgta |
18867957 |
T |
|
| Q |
208 |
aaaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttctgcatgaacaaaattc |
307 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
18867958 |
aaaaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttctgtctgaacaaagttc |
18868057 |
T |
|
| Q |
308 |
ac-ttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctg-tttttagcaaggaaaacacagctgtttttgtctgtg |
396 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18868058 |
actttttttctcattcttgcgcaccaagcaacaaaaacataagcacatgggctgttttttagcaaggaaaacacagctgtttttgtctgtg |
18868148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 396
Target Start/End: Original strand, 13553792 - 13554191
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13553792 |
gacatcatcatgttccctcatgttgccaccagatcacaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
13553891 |
T |
|
| Q |
109 |
aacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13553892 |
aacattctccatgtggcaaattttacaacttggacactcttgctctcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgta |
13553991 |
T |
|
| Q |
209 |
aaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattcc------------agaacgttctgcat |
296 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| |
|
|
| T |
13553992 |
aaaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctggagaacgttctgcat |
13554091 |
T |
|
| Q |
297 |
gaacaaaattcacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
396 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
13554092 |
gaacaaaattcacttttttctcattcttgtgctccaagcaacaaaaacataagcacatgggctgtttttaacaaggaaaacacagctatttttgtctgtg |
13554191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 395
Target Start/End: Original strand, 54624124 - 54624197
Alignment:
| Q |
322 |
cttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
395 |
Q |
| |
|
||||||| |||||| ||||||| | ||||||||||||||||||| | ||||| ||||||||||| ||||||||| |
|
|
| T |
54624124 |
cttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttgtctgt |
54624197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 395
Target Start/End: Complemental strand, 17530466 - 17530390
Alignment:
| Q |
319 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
395 |
Q |
| |
|
||||||| || |||||| ||||||| ||||||||||||||||||||| | ||||| |||||| |||| ||||||||| |
|
|
| T |
17530466 |
atccttgtgcgccaagctacaaaaacataagcacatgggctgtttttggaaaggacaacacaactgtatttgtctgt |
17530390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 395
Target Start/End: Complemental strand, 17535405 - 17535329
Alignment:
| Q |
319 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
395 |
Q |
| |
|
||||||| || |||||| ||||||| ||||||||||||||||||||| | ||||| |||||| |||| ||||||||| |
|
|
| T |
17535405 |
atccttgtgcgccaagctacaaaaacataagcacatgggctgtttttggaaaggacaacacaactgtatttgtctgt |
17535329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 395
Target Start/End: Original strand, 48978255 - 48978331
Alignment:
| Q |
319 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
395 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||||||| | ||||| ||||||||||| ||| ||||| |
|
|
| T |
48978255 |
atccttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttttctgt |
48978331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 319 - 395
Target Start/End: Original strand, 48987795 - 48987871
Alignment:
| Q |
319 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
395 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||||||| | ||||| |||||| |||| ||| ||||| |
|
|
| T |
48987795 |
atccttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacaactgtatttttctgt |
48987871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 396
Target Start/End: Original strand, 13459199 - 13459586
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnn--atcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttctta |
106 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| |||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13459199 |
gacatcaccatgtcccctcatgttgccaccagatcacaacttttttttttcatcacgcgtggttgtctcaaaaaggaaaggaacaacaagaatgttctta |
13459298 |
T |
|
| Q |
107 |
agaacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| ||||||| || |
|
|
| T |
13459299 |
agaacattctccatgtggcaaattttacaacttggacattcttgctctcaaagcaacaaaggaaaacacttgtagctttcaaagaagtgtcaaacagttg |
13459398 |
T |
|
| Q |
207 |
taaaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattccagaacgttctgcatgaacaaaatt |
306 |
Q |
| |
|
|||||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
13459399 |
taaaaa-aaacggcctccaaacttctacagcttgcattcacgtgtcaaccttttctctttgcaagttggaagttccagaacgttatgcatgaacaaaatt |
13459497 |
T |
|
| Q |
307 |
cacttttttctcatccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgtg |
396 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| || ||||||| |||| |
|
|
| T |
13459498 |
-acatttttctcattcttgcgcaccaagcaacaaaaacataagcacatgagctgtttttagcaaggaaaacacaactatttttgtttgtg |
13459586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 347175 - 346826
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
347175 |
gacatcatcatgttccctcatgttgccaccagatcgcaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
347076 |
T |
|
| Q |
109 |
aacattctccatgtggcaaattttacaacttggacattcttgctc-tcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
347075 |
aacattctccatgtggcaaattttacaacttggacactcttgctcttcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgt |
346976 |
T |
|
| Q |
208 |
--aaaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattcc------------agaacgttctg |
293 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
346975 |
aaaaaaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctagagaacgttctg |
346876 |
T |
|
| Q |
294 |
catgaacaaaattcacttttttctcatccttgcgcaccaagcaacaaaaa |
343 |
Q |
| |
|
|| |||||||||||||||||||||||| |||| || |||||||||||||| |
|
|
| T |
346875 |
cacgaacaaaattcacttttttctcattcttgtgctccaagcaacaaaaa |
346826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 361823 - 361474
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccaccagattacaactgnnnnnnnatcacgtgtgtttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
361823 |
gacatcatcatgttccctcatgttgccaccagatcgcaactgttttttcatcacgtgtggttgtctcaaaaaggaaaggaacaacaagaatgttcttaag |
361724 |
T |
|
| Q |
109 |
aacattctccatgtggcaaattttacaacttggacattcttgctc-tcaaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
361723 |
aacattctccatgtggcaaattttacaacttggacactcttgctcttcaaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgt |
361624 |
T |
|
| Q |
208 |
--aaaaacaagtggcccccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaagttggaaattcc------------agaacgttctg |
293 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
361623 |
aaaaaaacaagtggcctccaaacttctacagcttgcattcacgtgtccaccttttctctttgcaaattggaagttccagaacgttctggagaacgttctg |
361524 |
T |
|
| Q |
294 |
catgaacaaaattcacttttttctcatccttgcgcaccaagcaacaaaaa |
343 |
Q |
| |
|
|| |||||||||||||||||||||||| |||| || |||||||||||||| |
|
|
| T |
361523 |
cacgaacaaaattcacttttttctcattcttgtgctccaagcaacaaaaa |
361474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 395
Target Start/End: Complemental strand, 346553 - 346477
Alignment:
| Q |
319 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
395 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||||||| | |||| ||||||||||| ||||||||| |
|
|
| T |
346553 |
atccttgcgctccaagctacaaaaacacaagcacatgggctgtttttggagaggacaacacagctgtatttgtctgt |
346477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 395
Target Start/End: Original strand, 5600161 - 5600237
Alignment:
| Q |
319 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
395 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||||||| | ||||| ||||||||||| ||| ||||| |
|
|
| T |
5600161 |
atccttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttttctgt |
5600237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 395
Target Start/End: Original strand, 5609807 - 5609883
Alignment:
| Q |
319 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
395 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||||||| | ||||| ||||||||||| ||| ||||| |
|
|
| T |
5609807 |
atccttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttttctgt |
5609883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 319 - 395
Target Start/End: Complemental strand, 361201 - 361125
Alignment:
| Q |
319 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
395 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||| ||||||||| | |||| ||||||||||| ||||||||| |
|
|
| T |
361201 |
atccttgcgctccaagctacaaaaacacaagcacatgagctgtttttggagaggacaacacagctgtatttgtctgt |
361125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 385
Target Start/End: Complemental strand, 31151240 - 31151173
Alignment:
| Q |
319 |
atccttgcgcaccaagcaacaaaaat-ataagcacatgggctgtttttagcaaggaaaacacagctgt |
385 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
31151240 |
atccttgcgcgccaagctacaaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgt |
31151173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 1694282 - 1694225
Alignment:
| Q |
323 |
ttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacaca |
380 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| | | ||||||| ||||| |||||| |
|
|
| T |
1694282 |
ttgcgcgccaagcaacaaaaacataagcacatgagatatttttagaaaggacaacaca |
1694225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0508 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0508
Description:
Target: scaffold0508; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 156 - 293
Target Start/End: Original strand, 12249 - 12388
Alignment:
| Q |
156 |
aaagcaacaaagtacaacacttgtagcttccaaagaagtgccaaacagctgtaaaa--acaagtggcccccaaacttctacagcttgcattcacgtgtcc |
253 |
Q |
| |
|
|||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12249 |
aaagcaacaaaggacagcacttgtagctttcaaagaagtgccaaacagctgtaaaaaaacaagtggcctccaaacttctacagcttgcattcacgtgtcc |
12348 |
T |
|
| Q |
254 |
accttttctctttgcaagttggaaattccagaacgttctg |
293 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
12349 |
accttttctctttgcaaattggaagttccagaacgttctg |
12388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 395
Target Start/End: Original strand, 1790584 - 1790660
Alignment:
| Q |
319 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
395 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||||||| | ||||| ||||||||||| ||| ||||| |
|
|
| T |
1790584 |
atccttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttttctgt |
1790660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 395
Target Start/End: Original strand, 1800078 - 1800154
Alignment:
| Q |
319 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
395 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||||||| | ||||| ||||||||||| ||| ||||| |
|
|
| T |
1800078 |
atccttgcgcgccaagctacaaaaacacaagcacatgggctgtttttggaaaggacaacacagctgtatttttctgt |
1800154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 319 - 395
Target Start/End: Original strand, 22631986 - 22632061
Alignment:
| Q |
319 |
atccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
395 |
Q |
| |
|
||||||| || ||||| ||||||| | ||||||||||||||||||| ||||||| ||||||||||| ||||||||| |
|
|
| T |
22631986 |
atccttgtgcgccaagttacaaaaacacaagcacatgggctgttttt-gcaaggacaacacagctgtatttgtctgt |
22632061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 23640 - 23717
Alignment:
| Q |
318 |
catccttgcgcaccaagcaacaaaaatataagcacatgggctgtttttagcaaggaaaacacagctgtttttgtctgt |
395 |
Q |
| |
|
||||||||||| |||||| ||||||| | ||||||||||||||||| | ||||| ||||||||||| ||||||||| |
|
|
| T |
23640 |
catccttgcgcgccaagctacaaaaacacttgcacatgggctgtttttggaaaggacaacacagctgtatttgtctgt |
23717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0799 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0799
Description:
Target: scaffold0799; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 39
Target Start/End: Original strand, 2431 - 2461
Alignment:
| Q |
9 |
gacatcatcatgttccctcatgttgccacca |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2431 |
gacatcatcatgttccctcatgttgccacca |
2461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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