View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_low_17 (Length: 392)
Name: NF7779_low_17
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 3118635 - 3118260
Alignment:
| Q |
11 |
aatgagaagcacgttatcaagctatcatctgaggtcaccaaaagaaa-----------atgttagataaagtaacggagtaaagttacgatttttgagtc |
99 |
Q |
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| T |
3118635 |
aatgagaagcacgttatcaagctatcatctgaggtcaccaaaagaaagagtaaagaaaatgttagataaagtaacggagtaaagttacgatttttgagtc |
3118536 |
T |
|
| Q |
100 |
ttttcaaacacgaaacactaatgtttgacgtttctcctcaaccttgagaagnnnnnnnnttagtgaaccccacaaatggttcctaggtccccaaactttg |
199 |
Q |
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| T |
3118535 |
ttttcaaacacgaaacactaatgtttgacgtttctcctcaaccttgagaagaaaaaatattagtgaaccccacaaatggttcctaggtccccaaactttt |
3118436 |
T |
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| Q |
200 |
ggatccaacttgaccacataagactcaagtttcaagaaacttttcctcattctccgctaacnnnnnnnnnnnnnnngaggaaacgctaacaaannnnnnn |
299 |
Q |
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||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||| |
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| T |
3118435 |
ggatccaacatgaccatgtaagactcaagtttcaagaaacttttcctcattccccgctaac--aaaaaaaaattatgaagaaacgctaacaatttttttt |
3118338 |
T |
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| Q |
300 |
gtttgtacaagatgatttctttgtaattatttggtgaaaaataacataaaaggtaagaaagataaaatgttttttctt |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3118337 |
gtttgtacaagatgatttctttgtaattatttggtgaaaaataacataaaaggtaagaaagataaaatattttttctt |
3118260 |
T |
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