View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_low_18 (Length: 368)
Name: NF7779_low_18
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 10678575 - 10678253
Alignment:
| Q |
18 |
taaatgactttggagattgatccaaggggaacatcctttggaaatatgtcctcaggtgtaaatatggggagagggtgtgtagttgttggaaggtaatggt |
117 |
Q |
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| T |
10678575 |
taaatgactttggagattgatccaaggggaacatcctttggaaatatgtcctcaagtgtaaatatggggagagggtgtgtggttgttggaaggtaatggt |
10678476 |
T |
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| Q |
118 |
taaaagtcatcaaagaccgttgatatctctaggaaactccttttagatcaatcatatctcaacaaagattaatttctcaaggagaaatgtcttaacaccg |
217 |
Q |
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| T |
10678475 |
taaaagtcatcaaagaccgttgatatctcaaggaaactccttctagatca----tatcccaacaaagattaatttctcaaggagaaatgtcttaacaccg |
10678380 |
T |
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| Q |
218 |
ggtgcttcttagaattgtgctttttgtggtggtggtgaggaaagttcttctcacatcttcttgcattgtgatgtggtgtttaaggtttggctaaaggtgt |
317 |
Q |
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| T |
10678379 |
ggtgcttcttagaattgtgctttttgtggtggtggtgaggaaagttcttctcacatcttcttgcattgtgatgtggtgtttaaggtttggctaaaggtgt |
10678280 |
T |
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| Q |
318 |
tcaggcggcttaatttgtaattacaac |
344 |
Q |
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| T |
10678279 |
tcaggcggcttaatttgtaattacaac |
10678253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 43892398 - 43892435
Alignment:
| Q |
214 |
accgggtgcttcttagaattgtgctttttgtggtggtg |
251 |
Q |
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| T |
43892398 |
accgggtgcctctttgaattgtgctttttgtggtggtg |
43892435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 25663952 - 25664052
Alignment:
| Q |
179 |
acaaagattaatttctcaaggagaaatgtcttaacaccgggtgcttcttagaattgtgcttttt---gtggtggtggtgaggaaagttcttctcacatct |
275 |
Q |
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| T |
25663952 |
acaaagactaatttgacaaggagaaatgtctta---ccgcatgcttctttgaattgtgctttttgtggtggtggtggtgaggaaagttcttctcatgtct |
25664048 |
T |
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| Q |
276 |
tctt |
279 |
Q |
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|||| |
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| T |
25664049 |
tctt |
25664052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 333
Target Start/End: Original strand, 47209992 - 47210086
Alignment:
| Q |
239 |
ttttgtggtggtggtgaggaaagttcttctcacatcttcttgcattgtgatgtggtgtttaaggtttggctaaaggtgttcaggcggcttaattt |
333 |
Q |
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| T |
47209992 |
ttttgtgcaggtggtgaggaaacttctgctcatattttcttgcattgtgaggtggtgatgaaggagtgggaaaaggtgttcatgtggctcaattt |
47210086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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