View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7779_low_2 (Length: 337)
Name: NF7779_low_2
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7779_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 313
Target Start/End: Original strand, 35968433 - 35968730
Alignment:
| Q |
13 |
attattctaaaactaaaagtataaaccaaacaatttcaaggatattatttagcaaaaatgtatatttgagaaagaagnnnnnnnnnnnnnttagatttat |
112 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35968433 |
attatcctaaaactaaaagtataaaccaaacaatttcaaggatattatttagcaaaaatgtatatttgagaaagaagaaaaaaaaaa---ttagatttat |
35968529 |
T |
|
| Q |
113 |
gaaacatgaactgcatcatctcatcatctaacagtagaagcaacagtttgtgcccacaatctgagactatttttcatgtcaatttcattgttcattgcag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35968530 |
gaaacatgaactgcatcatctcatcatctaacagtagaagcaacagtttgtgcccacaatctgagactatttttcatgtcaatttcattgttcattgcag |
35968629 |
T |
|
| Q |
213 |
gaactttccaattcaccaaaggtttctcnnnnnnnctccaatcataaacctcccaagcttcggaaagataaggtctttgaaccacagattcatcataaac |
312 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35968630 |
gaactttccaattcaccaaaggtttctctttttttctccaatcataaacctcccaagcttcggaaagataaggtctttgaaccacagattcatcataaac |
35968729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 5183213 - 5183320
Alignment:
| Q |
133 |
tcatcatctaacagtagaagcaacagtttgtgcccacaatctgagactatttttcatgtcaatttcattgttcattgcaggaactttccaattcaccaaa |
232 |
Q |
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|||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||||||| |||||| | ||||||| |||||| |||| |||| |
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| T |
5183213 |
tcatcatctaacagtagaagcaacagtttgagcccagcacttgagactatatttcatgtcaacttcattagtaggagcaggaattttccatttcatcaaa |
5183312 |
T |
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| Q |
233 |
ggtttctc |
240 |
Q |
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|||||||| |
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| T |
5183313 |
ggtttctc |
5183320 |
T |
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