View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7779_low_20 (Length: 341)

Name: NF7779_low_20
Description: NF7779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7779_low_20
NF7779_low_20
[»] chr1 (1 HSPs)
chr1 (16-328)||(34052313-34052612)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 34052313 - 34052612
Alignment:
Q  16 tgtgaatatcaattttacacgtctgaattcaattt-gacttattcaaaaagtaatgtgtaaccaaacataagttaagtacttctccatgagagaactttc 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||           |||||| |||||||||||| ||||    
T  34052313 tgtgaatatcaattttacacgtctgaattcaattttgacttattcaaaatgtaatgtgtaaccaa-----------gtacttgtccatgagagaagtttc 34052401  T
Q  115 ttgaagcaattacatcaccccagttgtccacacacacatgtacagattgtccatgttacttgcagttataacatttaaagtttgccaccatatttaatac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34052402 ttgaagcaattacatcaccccagttgtccacacacacatgtacagattgtccatgttacttgcagttataacatttaaagtttgccaccctatttaatac 34052501  T
Q  215 actgccccaaactatatatggacaataataccaaaaatattga-cccttttaggtgtgtgtaaactcatagtacaaattgtcaacatctttacaactaag 313  Q
    ||||||||||||||||    | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34052502 actgccccaaactata----gtcaataataccaaaaatattgaccccttttaggtgtgtgtaaactcatagtacaaattgtcaacatctttacaactaag 34052597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University